Variant report

Variant	rs12419550
Chromosome Location	chr11:15439004-15439005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10732461	0.85[ASN][1000 genomes]
rs10766233	0.81[ASN][1000 genomes]
rs10766241	0.85[ASN][1000 genomes]
rs11023539	0.81[ASN][1000 genomes]
rs4356209	0.85[ASN][1000 genomes]
rs4381353	0.85[ASN][1000 genomes]
rs6486240	0.81[ASN][1000 genomes]
rs7479972	0.86[ASN][1000 genomes]
rs7927667	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15438400-15439600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:15438400-15439600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:15438600-15439400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr11:15438800-15439200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr11:15438800-15439400	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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