Variant report

Variant	rs10766476
Chromosome Location	chr11:18428166-18428167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:18398568..18400836-chr11:18427462..18430326,2	MCF-7	breast:
2	chr11:18414611..18420404-chr11:18425224..18433817,11	K562	blood:
3	chr11:18423297..18429050-chr11:18429237..18433863,11	K562	blood:

Variant related genes	Relation type
ENSG00000166796	Chromatin interaction
ENSG00000134333	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10766473	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832926	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11024636	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1830425	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2403278	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2403280	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2403298	0.88[AMR][1000 genomes]
rs3758681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3758683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486422	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6486423	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6486424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129689	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925445	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7938267	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7938942	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7943847	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7946331	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv933836	chr11:18300254-18440933	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv1047049	chr11:18359702-18520008	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv540955	chr11:18359702-18520008	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	esv1811183	chr11:18389643-18432437	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	nsv982991	chr11:18424852-18431306	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18418200-18433800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:18418400-18430600	Strong transcription	Fetal Muscle Trunk	muscle
3	chr11:18418400-18430800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:18418400-18430800	Strong transcription	Left Ventricle	heart
5	chr11:18418400-18433200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:18418600-18428600	Strong transcription	Fetal Intestine Large	intestine
7	chr11:18418600-18429400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
8	chr11:18418600-18429800	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr11:18418600-18430400	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:18418600-18430400	Strong transcription	Primary B cells from peripheral blood	blood
11	chr11:18418600-18430400	Strong transcription	Placenta	Placenta
12	chr11:18418600-18430400	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr11:18418600-18430400	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr11:18418600-18430600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:18418600-18430600	Strong transcription	Placenta Amnion	Placenta Amnion
16	chr11:18418600-18430600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:18418600-18430800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:18418600-18430800	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr11:18418600-18430800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr11:18418600-18430800	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:18418600-18430800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:18418600-18430800	Strong transcription	Fetal Muscle Leg	muscle
23	chr11:18418600-18430800	Strong transcription	Fetal Stomach	stomach
24	chr11:18418600-18430800	Strong transcription	Fetal Thymus	thymus
25	chr11:18418600-18430800	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr11:18418600-18430800	Strong transcription	Right Ventricle	heart
27	chr11:18418800-18430400	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr11:18418800-18430600	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:18418800-18430600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr11:18418800-18430600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:18418800-18430600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:18418800-18430800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:18418800-18430800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:18418800-18430800	Strong transcription	Adipose Nuclei	Adipose
35	chr11:18418800-18430800	Strong transcription	Osteobl	bone
36	chr11:18418800-18431000	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr11:18419000-18429200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:18419000-18430000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:18419000-18430400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:18419000-18430600	Strong transcription	Duodenum Mucosa	Duodenum
41	chr11:18419000-18430800	Strong transcription	Brain Anterior Caudate	brain
42	chr11:18419000-18430800	Strong transcription	Fetal Intestine Small	intestine
43	chr11:18419000-18431400	Strong transcription	HSMM	muscle
44	chr11:18419200-18428400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr11:18419200-18430400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr11:18419200-18430400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:18419200-18430400	Strong transcription	Rectal Smooth Muscle	rectum
48	chr11:18419200-18430600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr11:18419200-18430600	Strong transcription	Spleen	Spleen
50	chr11:18419400-18429200	Strong transcription	H9 Cell Line	embryonic stem cell

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