Variant report

Variant	rs10832926
Chromosome Location	chr11:18407320-18407321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:18406695..18409198-chr11:18428247..18430111,2	K562	blood:
2	chr11:18402803..18405154-chr11:18406672..18408656,2	K562	blood:
3	chr11:18404604..18407545-chr11:18408793..18411812,5	K562	blood:
4	chr11:18401460..18405154-chr11:18406672..18408749,3	K562	blood:

Variant related genes	Relation type
ENSG00000264603	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10766473	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766476	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832927	0.81[ASN][1000 genomes]
rs11024636	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1830425	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2403278	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2403280	0.88[AMR][1000 genomes]
rs2403298	0.84[AMR][1000 genomes]
rs3758681	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3758683	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6486422	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6486423	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6486424	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7129689	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7925445	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7938267	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7938942	0.84[AMR][1000 genomes]
rs7943847	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7946331	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv933836	chr11:18300254-18440933	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
4	nsv1047049	chr11:18359702-18520008	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
5	nsv540955	chr11:18359702-18520008	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
6	esv1811183	chr11:18389643-18432437	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18405800-18415600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:18406000-18407800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:18406000-18409400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr11:18406200-18408000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr11:18406200-18409000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:18406200-18409200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr11:18406200-18409200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr11:18406200-18409200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:18406200-18409200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:18406400-18407400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:18406400-18407800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr11:18406400-18407800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr11:18406400-18408200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:18406400-18408600	Weak transcription	HepG2	liver
15	chr11:18406400-18409200	Enhancers	NHDF-Ad	bronchial
16	chr11:18406400-18409400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr11:18406400-18409400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:18406400-18410800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:18406400-18413400	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr11:18406400-18413400	Weak transcription	K562	blood
21	chr11:18406400-18415000	Weak transcription	Lung	lung
22	chr11:18406400-18415200	Weak transcription	HSMM	muscle
23	chr11:18406400-18415400	Weak transcription	Right Ventricle	heart
24	chr11:18406600-18408200	Weak transcription	Fetal Muscle Leg	muscle
25	chr11:18406600-18408200	Weak transcription	Fetal Stomach	stomach
26	chr11:18406600-18408400	Weak transcription	Placenta	Placenta
27	chr11:18406600-18408600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr11:18406600-18408800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:18406600-18409200	Enhancers	Hela-S3	cervix
30	chr11:18406600-18409400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr11:18406600-18413400	Weak transcription	Primary B cells from cord blood	blood
32	chr11:18406600-18415200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:18406600-18415400	Weak transcription	Thymus	Thymus
34	chr11:18406800-18408600	Weak transcription	Fetal Thymus	thymus
35	chr11:18407000-18407600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:18407000-18407800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:18407000-18408200	Weak transcription	A549	lung
38	chr11:18407000-18408600	Weak transcription	Primary T cells from cord blood	blood
39	chr11:18407000-18412800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr11:18407000-18415400	Weak transcription	Fetal Intestine Large	intestine
41	chr11:18407200-18412800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:18407200-18413000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:18407200-18415400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:18407200-18415400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr11:18407200-18415400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:18407200-18415400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:18407200-18416000	Weak transcription	Gastric	stomach

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