Variant report

Variant	rs10767547
Chromosome Location	chr11:26555170-26555171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1018032	0.80[ASN][1000 genomes]
rs10501051	0.80[ASN][1000 genomes]
rs10742142	0.82[ASN][1000 genomes]
rs10742143	0.82[ASN][1000 genomes]
rs10742144	0.82[ASN][1000 genomes]
rs10742145	0.82[ASN][1000 genomes]
rs10767548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767551	0.82[ASN][1000 genomes]
rs10767552	0.82[ASN][1000 genomes]
rs10767553	0.82[ASN][1000 genomes]
rs10835001	0.82[ASN][1000 genomes]
rs11029600	0.80[ASN][1000 genomes]
rs11823219	0.80[ASN][1000 genomes]
rs11825007	0.80[ASN][1000 genomes]
rs1493742	0.89[ASN][1000 genomes]
rs2131696	0.80[AMR][1000 genomes]
rs2641389	0.89[ASN][1000 genomes]
rs2663164	0.83[ASN][1000 genomes]
rs2663165	0.80[ASN][1000 genomes]
rs2663166	0.89[ASN][1000 genomes]
rs2663167	0.89[ASN][1000 genomes]
rs2663168	0.89[ASN][1000 genomes]
rs2663170	0.80[ASN][1000 genomes]
rs2663171	0.89[ASN][1000 genomes]
rs2703401	0.89[ASN][1000 genomes]
rs2703402	0.87[ASN][1000 genomes]
rs2703403	0.89[ASN][1000 genomes]
rs2703404	0.80[ASN][1000 genomes]
rs2703405	0.80[ASN][1000 genomes]
rs2703406	0.80[ASN][1000 genomes]
rs2703410	0.80[ASN][1000 genomes]
rs2703411	0.80[ASN][1000 genomes]
rs2703412	0.80[ASN][1000 genomes]
rs2703413	0.89[ASN][1000 genomes]
rs2703418	0.82[ASN][1000 genomes]
rs2703422	0.80[ASN][1000 genomes]
rs293939	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs293940	0.82[ASN][1000 genomes]
rs293941	0.82[ASN][1000 genomes]
rs293943	0.81[ASN][1000 genomes]
rs3105881	0.82[ASN][1000 genomes]
rs3105882	0.89[ASN][1000 genomes]
rs3105883	0.89[ASN][1000 genomes]
rs3105884	0.89[ASN][1000 genomes]
rs3108883	0.80[ASN][1000 genomes]
rs3108884	0.89[ASN][1000 genomes]
rs364813	0.80[ASN][1000 genomes]
rs364850	0.80[ASN][1000 genomes]
rs365243	0.89[ASN][1000 genomes]
rs365407	0.80[ASN][1000 genomes]
rs365476	0.89[ASN][1000 genomes]
rs366611	0.80[ASN][1000 genomes]
rs367336	0.80[ASN][1000 genomes]
rs367624	0.89[ASN][1000 genomes]
rs368914	0.80[ASN][1000 genomes]
rs370647	0.89[ASN][1000 genomes]
rs371477	0.80[ASN][1000 genomes]
rs374868	0.89[ASN][1000 genomes]
rs378401	0.80[ASN][1000 genomes]
rs383158	0.80[ASN][1000 genomes]
rs386635	0.80[ASN][1000 genomes]
rs388936	0.89[ASN][1000 genomes]
rs391884	0.89[ASN][1000 genomes]
rs395397	0.89[ASN][1000 genomes]
rs395770	0.87[ASN][1000 genomes]
rs396863	0.80[ASN][1000 genomes]
rs397696	0.89[ASN][1000 genomes]
rs398314	0.80[ASN][1000 genomes]
rs398615	0.89[ASN][1000 genomes]
rs404583	0.80[ASN][1000 genomes]
rs410036	0.80[ASN][1000 genomes]
rs411463	0.89[ASN][1000 genomes]
rs416114	0.89[ASN][1000 genomes]
rs420143	0.80[ASN][1000 genomes]
rs423293	0.89[ASN][1000 genomes]
rs427800	0.89[ASN][1000 genomes]
rs429892	0.89[ASN][1000 genomes]
rs433132	0.80[ASN][1000 genomes]
rs434831	0.80[ASN][1000 genomes]
rs439065	0.80[ASN][1000 genomes]
rs439763	0.80[ASN][1000 genomes]
rs440645	0.89[ASN][1000 genomes]
rs443334	0.80[ASN][1000 genomes]
rs443466	0.89[ASN][1000 genomes]
rs444534	0.80[ASN][1000 genomes]
rs444622	0.80[ASN][1000 genomes]
rs445875	0.89[ASN][1000 genomes]
rs448290	0.89[ASN][1000 genomes]
rs448525	0.80[ASN][1000 genomes]
rs449594	0.89[ASN][1000 genomes]
rs449621	0.89[ASN][1000 genomes]
rs450519	0.80[ASN][1000 genomes]
rs453947	0.80[ASN][1000 genomes]
rs477380	0.89[ASN][1000 genomes]
rs4923364	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs516398	0.89[ASN][1000 genomes]
rs550083	0.80[ASN][1000 genomes]
rs551759	0.82[ASN][1000 genomes]
rs72875939	0.80[ASN][1000 genomes]
rs7932847	0.81[AMR][1000 genomes]
rs9734458	0.80[ASN][1000 genomes]
rs9988806	0.81[AMR][1000 genomes]
rs9988920	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9988921	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1039308	chr11:26529848-26555414	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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