Variant report

Variant	rs9988806
Chromosome Location	chr11:26552679-26552680
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs10501051	1.00[JPT][hapmap]
rs10742142	1.00[JPT][hapmap]
rs10742143	1.00[JPT][hapmap]
rs10742144	1.00[JPT][hapmap]
rs10742145	1.00[JPT][hapmap]
rs10767544	0.88[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs10767545	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10767546	0.82[ASN][1000 genomes]
rs10767547	0.81[AMR][1000 genomes]
rs10767548	0.81[AMR][1000 genomes]
rs10767552	1.00[JPT][hapmap]
rs10767553	1.00[JPT][hapmap]
rs10834996	0.92[JPT][hapmap]
rs10834997	0.92[JPT][hapmap]
rs10834999	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.82[LWK][hapmap];0.93[ASN][1000 genomes]
rs11029582	0.84[JPT][hapmap]
rs11029583	0.84[JPT][hapmap]
rs11029595	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11029596	0.81[ASN][1000 genomes]
rs11029598	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11029600	1.00[JPT][hapmap]
rs11823219	1.00[JPT][hapmap]
rs11825007	1.00[JPT][hapmap]
rs1389459	0.86[ASN][1000 genomes]
rs1472933	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1493742	1.00[JPT][hapmap]
rs16915828	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2087974	0.83[CHD][hapmap]
rs2131696	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2663165	1.00[JPT][hapmap]
rs2663168	1.00[JPT][hapmap]
rs2663170	1.00[JPT][hapmap]
rs2663171	1.00[JPT][hapmap]
rs2703403	1.00[JPT][hapmap]
rs2703404	1.00[JPT][hapmap]
rs2703408	1.00[JPT][hapmap]
rs2703411	1.00[JPT][hapmap]
rs2703413	1.00[JPT][hapmap]
rs2703417	0.82[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2703418	1.00[JPT][hapmap]
rs2703422	1.00[JPT][hapmap]
rs293939	1.00[JPT][hapmap]
rs293940	1.00[JPT][hapmap]
rs293941	1.00[JPT][hapmap]
rs293943	1.00[JPT][hapmap]
rs294011	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs294012	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs294013	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs294014	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs294015	0.86[CHB][hapmap];0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs294018	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs294020	0.84[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs294021	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs294027	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs294028	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs3105881	1.00[JPT][hapmap]
rs3105884	1.00[JPT][hapmap]
rs364850	1.00[JPT][hapmap]
rs365243	1.00[JPT][hapmap]
rs367624	1.00[JPT][hapmap]
rs368786	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs370711	0.83[ASN][1000 genomes]
rs372878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs375773	0.83[ASN][1000 genomes]
rs383137	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs383158	1.00[JPT][hapmap]
rs389022	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs389051	1.00[JPT][hapmap]
rs392240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs396607	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs397696	1.00[JPT][hapmap]
rs398191	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs398314	1.00[JPT][hapmap]
rs407632	0.85[ASN][1000 genomes]
rs410036	1.00[JPT][hapmap]
rs410617	0.81[ASN][1000 genomes]
rs415964	1.00[JPT][hapmap]
rs420143	0.84[JPT][hapmap]
rs425806	0.85[ASN][1000 genomes]
rs427800	1.00[JPT][hapmap]
rs430563	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs431479	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs439065	1.00[JPT][hapmap]
rs440645	1.00[JPT][hapmap]
rs444534	1.00[JPT][hapmap]
rs444622	1.00[JPT][hapmap]
rs4923362	0.86[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4923363	0.85[ASN][1000 genomes]
rs4923364	0.90[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.87[ASN][1000 genomes]
rs511371	1.00[JPT][hapmap]
rs550083	1.00[JPT][hapmap]
rs551759	1.00[JPT][hapmap]
rs7114965	0.93[LWK][hapmap];0.97[MKK][hapmap]
rs7119396	0.84[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.93[ASN][1000 genomes]
rs7122642	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7126899	0.91[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7932847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942067	0.84[JPT][hapmap]
rs7945815	0.84[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];0.80[LWK][hapmap];0.91[ASN][1000 genomes]
rs9988920	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9988921	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1039308	chr11:26529848-26555414	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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