Variant report

Variant	rs7119396
Chromosome Location	chr11:26545446-26545447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26544159..26545613-chr11:26671003..26672359,7	MCF-7	breast:

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:103)

rs_ID	r²[population]
rs10501051	0.92[JPT][hapmap]
rs10501056	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs10742142	0.92[JPT][hapmap]
rs10742143	0.92[JPT][hapmap]
rs10742144	0.91[JPT][hapmap]
rs10742145	0.90[JPT][hapmap]
rs10767542	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs10767544	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10767545	0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10767546	0.84[ASN][1000 genomes]
rs10767552	0.91[JPT][hapmap]
rs10767553	0.92[JPT][hapmap]
rs10834986	0.87[MEX][hapmap]
rs10834996	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10834997	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10834999	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029595	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs11029596	0.85[ASN][1000 genomes]
rs11029598	0.92[JPT][hapmap]
rs11029600	0.92[JPT][hapmap]
rs11029614	0.80[CHD][hapmap]
rs1125621	0.87[MEX][hapmap]
rs11823219	0.92[JPT][hapmap]
rs11825007	0.91[JPT][hapmap]
rs1389459	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1472933	0.98[ASN][1000 genomes]
rs1493742	0.92[JPT][hapmap]
rs16915828	0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1848562	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1960088	0.82[EUR][1000 genomes]
rs2087972	0.83[EUR][1000 genomes]
rs2087974	0.83[CEU][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap]
rs2131696	0.92[ASN][1000 genomes]
rs2663165	0.92[JPT][hapmap]
rs2663168	0.92[JPT][hapmap]
rs2663170	0.91[JPT][hapmap]
rs2663171	0.92[JPT][hapmap]
rs2703403	0.92[JPT][hapmap]
rs2703404	0.92[JPT][hapmap]
rs2703408	0.92[JPT][hapmap]
rs2703411	0.92[JPT][hapmap]
rs2703413	0.89[JPT][hapmap]
rs2703417	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2703418	0.92[JPT][hapmap]
rs2703422	0.92[JPT][hapmap]
rs293939	0.91[JPT][hapmap]
rs293940	0.92[JPT][hapmap]
rs293941	0.92[JPT][hapmap]
rs293943	0.92[JPT][hapmap]
rs294011	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs294012	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs294013	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs294014	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs294015	0.91[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs294018	0.91[CEU][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs294020	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs294021	0.91[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs294027	0.92[JPT][hapmap]
rs294028	1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3105881	0.90[JPT][hapmap]
rs3105884	0.92[JPT][hapmap]
rs364850	0.92[JPT][hapmap]
rs365243	0.92[JPT][hapmap]
rs367624	0.92[JPT][hapmap]
rs368786	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs370711	0.88[ASN][1000 genomes]
rs372878	0.88[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs375773	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs383137	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs383158	0.92[JPT][hapmap]
rs389022	0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs389051	0.88[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs392240	0.88[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs396607	0.92[JPT][hapmap]
rs397696	0.91[JPT][hapmap]
rs398191	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs398314	0.92[JPT][hapmap]
rs4032916	0.82[EUR][1000 genomes]
rs407632	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs410036	0.91[JPT][hapmap]
rs410617	0.85[ASN][1000 genomes]
rs415964	0.91[JPT][hapmap]
rs420143	0.83[JPT][hapmap]
rs425806	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs427800	0.90[JPT][hapmap]
rs430563	0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs431479	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs439065	0.91[JPT][hapmap]
rs440645	0.92[JPT][hapmap]
rs4444033	0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs444534	0.92[JPT][hapmap]
rs444622	1.00[JPT][hapmap]
rs4923362	0.90[CHD][hapmap];0.92[JPT][hapmap]
rs4923364	0.93[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs511371	0.91[JPT][hapmap]
rs550083	0.92[JPT][hapmap]
rs551759	0.92[JPT][hapmap]
rs7122642	0.93[ASN][1000 genomes]
rs7126899	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs721258	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs7932847	0.93[ASN][1000 genomes]
rs7945815	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9988806	0.84[CEU][hapmap];0.88[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1039308	chr11:26529848-26555414	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26544400-26545600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr11:26545400-26545600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:26545400-26545600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:26545400-26545800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr11:26545400-26546000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr11:26545400-26546400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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