Variant report

Variant	rs389051
Chromosome Location	chr11:26544453-26544454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26318636..26319225-chr11:26543911..26544770,2	MCF-7	breast:
2	chr11:26544159..26545613-chr11:26671003..26672359,7	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10501051	1.00[JPT][hapmap]
rs10501053	0.86[CHD][hapmap]
rs10742142	1.00[JPT][hapmap]
rs10742143	1.00[JPT][hapmap]
rs10742144	1.00[JPT][hapmap]
rs10742145	1.00[JPT][hapmap]
rs10767544	0.91[JPT][hapmap]
rs10767545	1.00[JPT][hapmap]
rs10767546	0.97[ASN][1000 genomes]
rs10767551	0.80[ASN][1000 genomes]
rs10767552	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10767553	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10834996	0.92[JPT][hapmap]
rs10834997	0.92[JPT][hapmap]
rs10834999	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11029582	0.87[CEU][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs11029583	0.87[CEU][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs11029595	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029596	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11029598	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11029600	1.00[JPT][hapmap]
rs11823219	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11825007	1.00[JPT][hapmap]
rs1472933	0.84[ASN][1000 genomes]
rs1493742	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs16915828	0.94[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17243440	0.86[CHD][hapmap]
rs2663165	1.00[JPT][hapmap]
rs2663168	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs2663170	1.00[JPT][hapmap]
rs2663171	1.00[JPT][hapmap]
rs2703403	0.86[CHD][hapmap];1.00[JPT][hapmap]
rs2703404	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2703408	1.00[JPT][hapmap]
rs2703411	1.00[JPT][hapmap]
rs2703413	1.00[JPT][hapmap]
rs2703417	0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2703418	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs2703422	0.95[CHD][hapmap];1.00[JPT][hapmap]
rs293939	1.00[JPT][hapmap]
rs293940	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs293941	1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs293943	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs294011	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs294012	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs294013	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs294014	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs294015	0.85[ASW][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs294018	0.85[ASW][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];0.97[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs294020	0.92[JPT][hapmap]
rs294021	0.86[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs294027	0.84[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs294028	0.92[JPT][hapmap]
rs3105881	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs3105884	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs364850	1.00[JPT][hapmap]
rs365243	1.00[JPT][hapmap]
rs367624	1.00[JPT][hapmap]
rs368786	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs370711	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs372878	0.88[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs375773	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs383137	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs383158	1.00[JPT][hapmap]
rs389022	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs392240	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs396607	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs397696	1.00[JPT][hapmap]
rs398191	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs398314	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs407632	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs410036	1.00[JPT][hapmap]
rs410617	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs415964	1.00[JPT][hapmap]
rs420143	0.88[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap]
rs425806	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs427800	1.00[JPT][hapmap]
rs430563	0.92[ASW][hapmap];0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs431479	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs439065	0.95[CHD][hapmap];1.00[JPT][hapmap]
rs440645	0.91[CHD][hapmap];1.00[JPT][hapmap]
rs444534	1.00[JPT][hapmap]
rs444622	1.00[JPT][hapmap]
rs4923362	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4923363	0.80[ASN][1000 genomes]
rs4923364	1.00[JPT][hapmap]
rs511371	1.00[JPT][hapmap]
rs550083	1.00[JPT][hapmap]
rs551759	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7119396	0.88[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7126899	0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs72891214	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7942067	0.84[JPT][hapmap]
rs7945815	0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs9988806	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1039308	chr11:26529848-26555414	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26544400-26545200	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:26544400-26545200	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr11:26544400-26545400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr11:26544400-26545600	Active TSS	HUES48 Cell Line	embryonic stem cell

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