Variant report

Variant	rs410617
Chromosome Location	chr11:26547353-26547354
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10742142	0.80[ASN][1000 genomes]
rs10742143	0.80[ASN][1000 genomes]
rs10742144	0.80[ASN][1000 genomes]
rs10742145	0.80[ASN][1000 genomes]
rs10767546	0.99[ASN][1000 genomes]
rs10767551	0.81[ASN][1000 genomes]
rs10767552	0.81[ASN][1000 genomes]
rs10767553	0.81[ASN][1000 genomes]
rs10834999	0.85[ASN][1000 genomes]
rs10835001	0.80[ASN][1000 genomes]
rs11029595	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11029596	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029598	0.94[ASN][1000 genomes]
rs1472933	0.85[ASN][1000 genomes]
rs16915828	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703417	0.94[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2703418	0.81[ASN][1000 genomes]
rs293939	0.80[ASN][1000 genomes]
rs293940	0.81[ASN][1000 genomes]
rs293941	0.81[ASN][1000 genomes]
rs293943	0.80[ASN][1000 genomes]
rs294011	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs294012	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs294013	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs294014	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs294015	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs294018	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs294021	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs294027	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3105881	0.81[ASN][1000 genomes]
rs368786	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs370711	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs372878	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs375773	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs383137	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs389022	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs389051	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs392240	0.85[ASN][1000 genomes]
rs398191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs407632	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs425806	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs430563	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431479	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923362	0.82[ASN][1000 genomes]
rs4923363	0.82[ASN][1000 genomes]
rs551759	0.81[ASN][1000 genomes]
rs7119396	0.85[ASN][1000 genomes]
rs7122642	0.81[ASN][1000 genomes]
rs7126899	0.83[ASN][1000 genomes]
rs72891214	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7932847	0.81[ASN][1000 genomes]
rs7945815	0.83[ASN][1000 genomes]
rs9988806	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1039308	chr11:26529848-26555414	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links