Variant report

Variant	rs407632
Chromosome Location	chr11:26541977-26541978
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10501056	0.82[EUR][1000 genomes]
rs10767542	0.82[EUR][1000 genomes]
rs10767545	0.83[EUR][1000 genomes]
rs10767546	0.92[ASN][1000 genomes]
rs10834996	0.83[EUR][1000 genomes]
rs10834997	0.83[EUR][1000 genomes]
rs10834999	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029595	0.88[ASN][1000 genomes]
rs11029596	0.93[ASN][1000 genomes]
rs11029598	0.87[ASN][1000 genomes]
rs1389459	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1472933	0.90[ASN][1000 genomes]
rs16915828	0.93[ASN][1000 genomes]
rs1848562	0.80[EUR][1000 genomes]
rs2087972	0.81[EUR][1000 genomes]
rs2131696	0.84[ASN][1000 genomes]
rs2703417	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs294011	0.97[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs294012	0.97[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs294013	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs294014	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs294015	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs294018	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs294020	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs294021	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs294027	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs294028	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs368786	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs372878	0.84[ASN][1000 genomes]
rs375773	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs383137	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs389022	0.84[ASN][1000 genomes]
rs389051	0.97[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs392240	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs398191	0.97[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs410617	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs425806	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs430563	0.95[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs431479	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4444033	0.91[EUR][1000 genomes]
rs7119396	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7122642	0.85[ASN][1000 genomes]
rs7126899	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72891214	0.83[ASN][1000 genomes]
rs7932847	0.85[ASN][1000 genomes]
rs7945815	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9988806	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1039308	chr11:26529848-26555414	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1050121	chr11:26532655-26675303	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv540974	chr11:26532655-26675303	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26540800-26542000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:26540800-26543200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:26541000-26542000	Enhancers	Adipose Nuclei	Adipose

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