Variant report

Variant	rs4444033
Chromosome Location	chr11:26531015-26531016
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10501056	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767540	0.80[EUR][1000 genomes]
rs10767541	0.80[EUR][1000 genomes]
rs10767542	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767543	0.80[EUR][1000 genomes]
rs10767544	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10767545	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10834983	0.80[EUR][1000 genomes]
rs10834984	0.80[EUR][1000 genomes]
rs10834985	0.80[EUR][1000 genomes]
rs10834986	0.80[EUR][1000 genomes]
rs10834987	0.80[EUR][1000 genomes]
rs10834988	0.80[EUR][1000 genomes]
rs10834989	0.80[EUR][1000 genomes]
rs10834990	0.80[EUR][1000 genomes]
rs10834992	0.80[EUR][1000 genomes]
rs10834993	0.80[EUR][1000 genomes]
rs10834994	0.80[EUR][1000 genomes]
rs10834996	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10834997	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10834999	0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11029588	0.80[EUR][1000 genomes]
rs1125621	0.80[EUR][1000 genomes]
rs1125622	0.80[EUR][1000 genomes]
rs1125623	0.80[EUR][1000 genomes]
rs1125624	0.80[EUR][1000 genomes]
rs1389459	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1472933	0.82[ASN][1000 genomes]
rs1602938	0.80[EUR][1000 genomes]
rs1602939	0.80[EUR][1000 genomes]
rs1848562	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1960088	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2087972	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2087974	0.80[EUR][1000 genomes]
rs2703417	0.92[EUR][1000 genomes]
rs294015	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs294018	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs294020	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs294021	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs294028	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs375773	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs392240	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4032916	0.86[EUR][1000 genomes]
rs407632	0.91[EUR][1000 genomes]
rs425806	0.91[EUR][1000 genomes]
rs7119396	0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7126899	0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7929215	0.80[EUR][1000 genomes]
rs7929544	0.80[EUR][1000 genomes]
rs7935953	0.80[EUR][1000 genomes]
rs7944026	0.80[EUR][1000 genomes]
rs7944034	0.80[EUR][1000 genomes]
rs7945815	0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1039308	chr11:26529848-26555414	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26529800-26531200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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