Variant report

Variant	rs10834997
Chromosome Location	chr11:26526948-26526949
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:137)

rs_ID	r²[population]
rs10501051	0.92[JPT][hapmap]
rs10501056	0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10742142	0.92[JPT][hapmap]
rs10742143	0.92[JPT][hapmap]
rs10742144	0.91[JPT][hapmap]
rs10742145	0.90[JPT][hapmap]
rs10767537	0.83[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767538	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10767540	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10767541	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10767542	0.87[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10767543	0.82[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10767544	0.87[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10767545	0.89[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10767552	0.91[JPT][hapmap]
rs10767553	0.92[JPT][hapmap]
rs10834983	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834984	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834985	0.86[CEU][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834986	0.82[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834987	0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834988	0.83[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834989	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834990	0.83[CEU][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834991	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10834992	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834993	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834994	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10834996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834999	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11029574	0.81[EUR][1000 genomes]
rs11029576	0.81[EUR][1000 genomes]
rs11029577	0.81[EUR][1000 genomes]
rs11029587	0.85[CEU][hapmap];0.96[YRI][hapmap]
rs11029588	0.81[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11029589	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11029595	0.91[JPT][hapmap]
rs11029598	0.92[JPT][hapmap]
rs11029600	0.92[JPT][hapmap]
rs1125621	0.82[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1125622	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1125623	0.81[CEU][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1125624	0.83[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11823219	0.92[JPT][hapmap]
rs11825007	0.91[JPT][hapmap]
rs12290380	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1355131	0.81[EUR][1000 genomes]
rs1355132	0.81[EUR][1000 genomes]
rs1389459	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1472933	0.84[ASN][1000 genomes]
rs1493742	0.92[JPT][hapmap]
rs1602938	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1602939	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16915828	0.91[JPT][hapmap]
rs1848562	0.83[AMR][1000 genomes]
rs1960088	0.81[AMR][1000 genomes]
rs2087974	0.91[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2136310	0.82[EUR][1000 genomes]
rs2663165	0.92[JPT][hapmap]
rs2663168	0.92[JPT][hapmap]
rs2663170	0.91[JPT][hapmap]
rs2663171	0.92[JPT][hapmap]
rs2703403	0.92[JPT][hapmap]
rs2703404	0.92[JPT][hapmap]
rs2703408	0.92[JPT][hapmap]
rs2703411	0.92[JPT][hapmap]
rs2703413	0.89[JPT][hapmap]
rs2703417	0.82[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs2703418	0.92[JPT][hapmap]
rs2703422	0.92[JPT][hapmap]
rs2860040	0.81[EUR][1000 genomes]
rs293939	0.91[JPT][hapmap]
rs293940	0.92[JPT][hapmap]
rs293941	0.92[JPT][hapmap]
rs293943	0.92[JPT][hapmap]
rs294011	0.92[JPT][hapmap]
rs294012	0.92[JPT][hapmap]
rs294013	0.92[JPT][hapmap]
rs294014	0.92[JPT][hapmap]
rs294015	0.82[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs294018	0.82[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs294020	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs294021	0.82[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs294027	0.92[JPT][hapmap]
rs294028	0.91[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3105881	0.90[JPT][hapmap]
rs3105884	0.92[JPT][hapmap]
rs36051894	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs364850	0.92[JPT][hapmap]
rs365243	0.92[JPT][hapmap]
rs367624	0.92[JPT][hapmap]
rs368786	0.92[JPT][hapmap]
rs372878	0.92[JPT][hapmap]
rs375773	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs383137	0.92[JPT][hapmap]
rs383158	0.92[JPT][hapmap]
rs389022	0.92[JPT][hapmap]
rs389051	0.92[JPT][hapmap]
rs392240	0.91[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs396607	0.92[JPT][hapmap]
rs397696	0.92[JPT][hapmap]
rs398191	0.92[JPT][hapmap]
rs398314	0.92[JPT][hapmap]
rs407632	0.83[EUR][1000 genomes]
rs410036	0.91[JPT][hapmap]
rs415964	0.91[JPT][hapmap]
rs425806	0.83[EUR][1000 genomes]
rs427800	0.90[JPT][hapmap]
rs430563	0.83[JPT][hapmap]
rs431479	0.92[JPT][hapmap]
rs439065	0.91[JPT][hapmap]
rs440645	0.92[JPT][hapmap]
rs4418757	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4444033	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs444534	0.92[JPT][hapmap]
rs444622	1.00[JPT][hapmap]
rs4923360	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4923362	0.92[JPT][hapmap]
rs4923364	0.92[JPT][hapmap]
rs511371	0.91[JPT][hapmap]
rs550083	0.92[JPT][hapmap]
rs551759	0.92[JPT][hapmap]
rs7119396	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7126899	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7128247	0.82[CHB][hapmap]
rs7128699	0.83[CEU][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs721258	0.91[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72889134	0.80[EUR][1000 genomes]
rs72891214	0.81[ASN][1000 genomes]
rs7929215	0.86[CEU][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7929544	0.83[CEU][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7935953	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7942067	0.90[CHB][hapmap]
rs7944026	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7944034	0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7945815	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9988806	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26526200-26529400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links