Variant report

Variant	rs72891214
Chromosome Location	chr11:26531419-26531420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10767544	0.82[ASN][1000 genomes]
rs10767545	0.82[ASN][1000 genomes]
rs10767546	0.89[ASN][1000 genomes]
rs10834996	0.81[ASN][1000 genomes]
rs10834997	0.81[ASN][1000 genomes]
rs11029582	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11029583	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11029595	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11029596	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11029598	0.84[ASN][1000 genomes]
rs16915828	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2703417	0.83[ASN][1000 genomes]
rs293948	0.82[EUR][1000 genomes]
rs294011	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs294012	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs294013	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs294014	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs294015	0.86[ASN][1000 genomes]
rs294018	0.93[ASN][1000 genomes]
rs294020	0.85[ASN][1000 genomes]
rs294021	0.93[ASN][1000 genomes]
rs294027	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs294028	0.85[ASN][1000 genomes]
rs368786	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs372878	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs375773	0.86[ASN][1000 genomes]
rs383137	0.90[ASN][1000 genomes]
rs389022	0.81[ASN][1000 genomes]
rs389051	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs398191	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs407632	0.83[ASN][1000 genomes]
rs410617	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs425806	0.83[ASN][1000 genomes]
rs430563	0.90[ASN][1000 genomes]
rs431479	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6484212	0.80[EUR][1000 genomes]
rs7112559	0.81[EUR][1000 genomes]
rs7128247	0.81[EUR][1000 genomes]
rs7937933	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7942067	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1039308	chr11:26529848-26555414	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26531200-26533800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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