Variant report

Variant	rs11029574
Chromosome Location	chr11:26492563-26492564
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr11:26492553-26492914	GM12878	blood:	n/a	n/a
2	RAD21	chr11:26492436-26492950	SK-N-SH	brain:	n/a	n/a
3	RAD21	chr11:26492549-26492907	GM12878	blood:	n/a	n/a
4	CTCF	chr11:26492525-26492922	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ANO3	TF binding region

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10767536	0.83[EUR][1000 genomes]
rs10767537	0.81[EUR][1000 genomes]
rs10767540	0.80[EUR][1000 genomes]
rs10767541	0.80[EUR][1000 genomes]
rs10767545	0.81[EUR][1000 genomes]
rs10834983	0.80[EUR][1000 genomes]
rs10834984	0.80[EUR][1000 genomes]
rs10834985	0.80[EUR][1000 genomes]
rs10834986	0.80[EUR][1000 genomes]
rs10834987	0.80[EUR][1000 genomes]
rs10834988	0.80[EUR][1000 genomes]
rs10834989	0.80[EUR][1000 genomes]
rs10834990	0.80[EUR][1000 genomes]
rs10834992	0.80[EUR][1000 genomes]
rs10834993	0.80[EUR][1000 genomes]
rs10834994	0.80[EUR][1000 genomes]
rs10834996	0.81[EUR][1000 genomes]
rs10834997	0.81[EUR][1000 genomes]
rs11029571	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11029576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11029577	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029582	0.86[YRI][hapmap]
rs11029583	0.86[YRI][hapmap]
rs11029588	0.80[EUR][1000 genomes]
rs1125621	0.80[EUR][1000 genomes]
rs1125622	0.80[EUR][1000 genomes]
rs1125623	0.80[EUR][1000 genomes]
rs1125624	0.80[EUR][1000 genomes]
rs12290380	0.81[EUR][1000 genomes]
rs1355131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1355132	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1602938	0.80[EUR][1000 genomes]
rs1602939	0.80[EUR][1000 genomes]
rs2087974	0.85[CEU][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2860040	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4418757	0.81[EUR][1000 genomes]
rs4923360	0.82[EUR][1000 genomes]
rs7119659	1.00[CEU][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7128699	0.81[EUR][1000 genomes]
rs721258	0.86[CEU][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72889134	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929215	0.80[EUR][1000 genomes]
rs7929544	0.80[EUR][1000 genomes]
rs7935953	0.80[EUR][1000 genomes]
rs7942067	0.86[YRI][hapmap]
rs7944026	0.80[EUR][1000 genomes]
rs7944034	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26472000-26503600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26488200-26494800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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