Variant report

Variant	rs721258
Chromosome Location	chr11:26508587-26508588
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10742145	0.82[JPT][hapmap]
rs10767537	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs10767538	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs10767540	0.86[EUR][1000 genomes]
rs10767541	0.86[EUR][1000 genomes]
rs10767543	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs10767544	0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767545	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10767552	0.83[JPT][hapmap]
rs10834983	0.86[EUR][1000 genomes]
rs10834984	0.86[EUR][1000 genomes]
rs10834985	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs10834986	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs10834987	0.86[EUR][1000 genomes]
rs10834988	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs10834989	0.86[EUR][1000 genomes]
rs10834990	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs10834991	0.86[EUR][1000 genomes]
rs10834992	0.86[EUR][1000 genomes]
rs10834993	0.86[EUR][1000 genomes]
rs10834994	0.86[EUR][1000 genomes]
rs10834996	0.91[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10834997	0.91[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10834999	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs11029571	0.86[EUR][1000 genomes]
rs11029574	0.86[CEU][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11029576	0.86[CEU][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11029577	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs11029582	0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11029583	0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11029587	0.85[CEU][hapmap]
rs11029588	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs11029589	0.85[EUR][1000 genomes]
rs11029598	0.86[YRI][hapmap]
rs1125621	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs1125622	0.86[EUR][1000 genomes]
rs1125623	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs1125624	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs12290380	0.88[EUR][1000 genomes]
rs1355131	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs1355132	0.93[EUR][1000 genomes]
rs1602938	0.86[EUR][1000 genomes]
rs1602939	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs16915828	0.86[YRI][hapmap]
rs1848562	0.81[EUR][1000 genomes]
rs1960088	0.80[EUR][1000 genomes]
rs2087974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2131697	0.82[CHB][hapmap]
rs2131698	0.82[CHB][hapmap]
rs2136310	0.83[EUR][1000 genomes]
rs2703417	0.85[JPT][hapmap]
rs2860040	0.86[CEU][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs294015	0.85[JPT][hapmap]
rs294018	0.85[JPT][hapmap]
rs294020	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs294021	0.85[JPT][hapmap]
rs294028	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs3105881	0.81[JPT][hapmap]
rs36051894	0.84[EUR][1000 genomes]
rs392240	0.91[JPT][hapmap]
rs4032916	0.80[EUR][1000 genomes]
rs4418757	0.88[EUR][1000 genomes]
rs444622	0.81[JPT][hapmap]
rs4923360	0.89[EUR][1000 genomes]
rs511371	0.83[JPT][hapmap]
rs6484212	0.80[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7112559	0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7119396	0.83[CEU][hapmap];0.85[JPT][hapmap]
rs7119659	0.86[CEU][hapmap];0.82[YRI][hapmap];0.86[EUR][1000 genomes]
rs7126899	0.82[CEU][hapmap];0.85[JPT][hapmap]
rs7128247	1.00[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs7128699	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs72889134	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7929215	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs7929544	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs7935953	0.86[EUR][1000 genomes]
rs7937933	0.96[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7942067	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7944026	0.86[EUR][1000 genomes]
rs7944034	0.86[EUR][1000 genomes]
rs7945815	0.83[CEU][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506200-26512600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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