Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11029577	0.90[YRI][hapmap];0.87[AFR][1000 genomes]
rs11029582	0.83[EUR][1000 genomes]
rs11029583	0.83[EUR][1000 genomes]
rs12288668	0.83[CEU][hapmap]
rs1355131	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs1355132	0.87[AFR][1000 genomes]
rs1389456	1.00[CEU][hapmap];0.80[JPT][hapmap];0.86[EUR][1000 genomes]
rs16915656	0.88[JPT][hapmap]
rs17309034	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs2087974	0.82[CHB][hapmap]
rs2126183	0.80[JPT][hapmap]
rs2131698	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169338	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs2169339	0.83[CEU][hapmap]
rs6484212	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7112559	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7128247	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7129064	0.83[CEU][hapmap];0.90[JPT][hapmap]
rs721258	0.82[CHB][hapmap]
rs72889142	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7937933	0.83[EUR][1000 genomes]
rs7942067	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7942432	1.00[CEU][hapmap];0.80[JPT][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26472000-26503600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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