Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10497404	0.90[JPT][hapmap]
rs11029582	0.80[EUR][1000 genomes]
rs11029583	0.80[EUR][1000 genomes]
rs12288668	0.83[CEU][hapmap]
rs1389456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16915622	0.90[JPT][hapmap]
rs16915655	1.00[JPT][hapmap]
rs16915656	1.00[JPT][hapmap]
rs17309034	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs2126183	1.00[JPT][hapmap]
rs2131697	1.00[CEU][hapmap];0.80[JPT][hapmap];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2131698	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2169338	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs2169339	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs4444034	0.80[JPT][hapmap]
rs6484212	0.85[EUR][1000 genomes]
rs7112559	0.83[EUR][1000 genomes]
rs7128247	0.83[EUR][1000 genomes]
rs7129064	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs72889142	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7937933	0.80[EUR][1000 genomes]
rs7942067	0.88[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26472000-26503600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: