Variant report

Variant	rs4444034
Chromosome Location	chr11:26393388-26393389
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10497404	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs11824236	0.81[EUR][1000 genomes]
rs11828427	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12098873	0.81[EUR][1000 genomes]
rs12287530	0.86[CEU][hapmap]
rs13377552	0.84[CEU][hapmap]
rs1381177	0.81[EUR][1000 genomes]
rs1461371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1461374	0.81[EUR][1000 genomes]
rs16915622	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs16915655	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs16915656	0.88[CHB][hapmap]
rs17309034	0.90[CHB][hapmap]
rs1845355	0.83[ASN][1000 genomes]
rs2085878	0.81[EUR][1000 genomes]
rs2085879	0.81[EUR][1000 genomes]
rs2085880	0.81[EUR][1000 genomes]
rs2126183	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs2169338	0.90[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2169339	0.90[CHB][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2199376	0.81[EUR][1000 genomes]
rs56072744	0.89[ASN][1000 genomes]
rs58872250	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877726	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61877727	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67498125	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7104759	0.85[CEU][hapmap]
rs7127048	0.85[ASN][1000 genomes]
rs7129064	0.90[CHB][hapmap];0.87[YRI][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs716700	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72886266	0.87[ASN][1000 genomes]
rs72886272	0.85[ASN][1000 genomes]
rs7925675	0.87[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs7942432	0.80[JPT][hapmap]
rs7945645	0.81[EUR][1000 genomes]
rs7946083	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs922246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26392600-26393800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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