Variant report

Variant	rs7925675
Chromosome Location	chr11:26402855-26402856
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs1037899	0.81[CHB][hapmap]
rs1037900	0.81[CHB][hapmap]
rs10497404	0.87[CEU][hapmap]
rs10742138	0.83[CHB][hapmap]
rs10767519	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10767520	0.91[ASN][1000 genomes]
rs11029538	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11029543	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11824236	0.93[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.83[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12098873	0.93[CHB][hapmap];0.90[JPT][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12270746	0.93[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs12274334	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12274387	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12275964	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12283791	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs12287530	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12287626	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12294597	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12294604	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13377552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1381177	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381181	0.88[ASN][1000 genomes]
rs1381183	0.88[ASN][1000 genomes]
rs1461364	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1461365	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1461366	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1461368	0.81[CHB][hapmap]
rs1461371	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs1461373	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1461374	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1461376	0.86[ASN][1000 genomes]
rs1461377	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1461380	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1461382	0.83[CEU][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap]
rs1461384	0.94[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap]
rs1461385	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap]
rs16915597	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs16915622	0.87[CEU][hapmap]
rs2006942	0.94[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2045703	0.81[CHB][hapmap]
rs2085878	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2085879	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2085880	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2126184	0.90[ASN][1000 genomes]
rs2126185	0.86[ASN][1000 genomes]
rs2199376	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4444034	0.87[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs4923354	0.81[CHB][hapmap];0.90[ASN][1000 genomes]
rs58872250	0.81[EUR][1000 genomes]
rs61877724	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61877726	0.81[EUR][1000 genomes]
rs61877727	0.81[EUR][1000 genomes]
rs7104759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7123997	0.81[CHB][hapmap]
rs7124839	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7128615	0.90[ASN][1000 genomes]
rs716700	0.87[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs716701	0.90[ASN][1000 genomes]
rs719106	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7480892	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7925120	0.83[CHB][hapmap]
rs7928015	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7931439	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7940514	0.93[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs7942291	0.94[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap]
rs7943164	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs7945645	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7946083	0.93[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs922246	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs961685	0.94[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9943473	0.94[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap]
rs9943594	0.94[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26402800-26403400	Enhancers	Adipose Nuclei	Adipose

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