Variant report

Variant	rs10497404
Chromosome Location	chr11:26413295-26413296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11828427	0.86[ASN][1000 genomes]
rs12274387	0.81[EUR][1000 genomes]
rs12275964	0.81[EUR][1000 genomes]
rs12287530	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs12294597	0.81[EUR][1000 genomes]
rs12294604	0.81[EUR][1000 genomes]
rs13377552	0.84[CEU][hapmap]
rs1389456	0.90[JPT][hapmap]
rs1461371	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs1461377	0.81[EUR][1000 genomes]
rs16915622	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs16915655	0.81[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs16915656	0.86[JPT][hapmap]
rs17309034	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1845355	0.82[ASN][1000 genomes]
rs2126183	0.81[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs2169338	0.81[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2169339	0.81[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4444034	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56072744	0.88[ASN][1000 genomes]
rs58872250	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61877726	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61877727	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67498125	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7104759	0.86[CEU][hapmap]
rs7127048	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7129064	0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs716700	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72886266	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72886272	0.84[ASN][1000 genomes]
rs7480892	0.81[EUR][1000 genomes]
rs7925675	0.87[CEU][hapmap]
rs7942432	0.90[JPT][hapmap]
rs7946083	0.82[CEU][hapmap]
rs922246	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs961685	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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