Variant report
| Variant | rs67498125 |
|---|---|
| Chromosome Location | chr11:26409956-26409957 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11828427 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12274387 | 0.81[EUR][1000 genomes] |
| rs12275964 | 0.81[EUR][1000 genomes] |
| rs12287530 | 0.81[EUR][1000 genomes] |
| rs12294597 | 0.81[EUR][1000 genomes] |
| rs12294604 | 0.81[EUR][1000 genomes] |
| rs1461377 | 0.81[EUR][1000 genomes] |
| rs16915655 | 0.87[ASN][1000 genomes] |
| rs1845355 | 0.81[ASN][1000 genomes] |
| rs2126183 | 0.87[ASN][1000 genomes] |
| rs2169338 | 0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2169339 | 0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4444034 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56072744 | 0.87[ASN][1000 genomes] |
| rs58872250 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61877726 | 0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61877727 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7127048 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7129064 | 0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs716700 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs72886266 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72886272 | 0.83[ASN][1000 genomes] |
| rs7480892 | 0.81[EUR][1000 genomes] |
| rs961685 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422406 | chr11:26329870-26473641 | Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3424642 | chr11:26408826-26411074 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26409400-26410800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
