Variant report
| Variant | rs58872250 |
|---|---|
| Chromosome Location | chr11:26399152-26399153 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:26396905..26399519-chr11:26402915..26404778,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11824236 | 0.81[EUR][1000 genomes] |
| rs11828427 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12098873 | 0.81[EUR][1000 genomes] |
| rs1381177 | 0.81[EUR][1000 genomes] |
| rs1461374 | 0.81[EUR][1000 genomes] |
| rs16915655 | 0.89[ASN][1000 genomes] |
| rs1845355 | 0.83[ASN][1000 genomes] |
| rs2085878 | 0.81[EUR][1000 genomes] |
| rs2085879 | 0.81[EUR][1000 genomes] |
| rs2085880 | 0.81[EUR][1000 genomes] |
| rs2126183 | 0.89[ASN][1000 genomes] |
| rs2169338 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2169339 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2199376 | 0.81[EUR][1000 genomes] |
| rs4444034 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56072744 | 0.89[ASN][1000 genomes] |
| rs61877726 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61877727 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs67498125 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7127048 | 0.85[ASN][1000 genomes] |
| rs7129064 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs716700 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72886266 | 0.87[ASN][1000 genomes] |
| rs72886272 | 0.85[ASN][1000 genomes] |
| rs7925675 | 0.81[EUR][1000 genomes] |
| rs7945645 | 0.81[EUR][1000 genomes] |
| rs7946083 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422406 | chr11:26329870-26473641 | Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26398000-26399200 | ZNF genes & repeats | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
