Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047414	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10047464	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11500182	0.83[EUR][1000 genomes]
rs12275424	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12277506	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12288668	0.83[EUR][1000 genomes]
rs12288844	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1389456	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16915655	0.91[ASN][1000 genomes]
rs2126183	0.91[ASN][1000 genomes]
rs2169338	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2169339	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4444034	0.83[ASN][1000 genomes]
rs56072744	0.91[ASN][1000 genomes]
rs57857863	0.82[EUR][1000 genomes]
rs58872250	0.83[ASN][1000 genomes]
rs61877726	0.83[ASN][1000 genomes]
rs61877727	0.83[ASN][1000 genomes]
rs67498125	0.81[ASN][1000 genomes]
rs7127048	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7129064	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs716700	0.83[ASN][1000 genomes]
rs72886266	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72886272	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7925575	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26462600-26473400	Weak transcription	Adipose Nuclei	Adipose
2	chr11:26471600-26472000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: