Variant report

Variant	rs57857863
Chromosome Location	chr11:26457688-26457689
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10047414	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047464	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742138	0.97[ASN][1000 genomes]
rs10742139	0.97[ASN][1000 genomes]
rs10767528	0.88[ASN][1000 genomes]
rs10767529	1.00[ASN][1000 genomes]
rs10767530	1.00[ASN][1000 genomes]
rs10767531	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767532	1.00[ASN][1000 genomes]
rs10767535	1.00[ASN][1000 genomes]
rs10834982	0.91[ASN][1000 genomes]
rs11029555	0.99[ASN][1000 genomes]
rs11029556	1.00[ASN][1000 genomes]
rs11029557	1.00[ASN][1000 genomes]
rs11500182	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820893	0.92[ASN][1000 genomes]
rs12273739	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12275424	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12277506	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12288668	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288844	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12575612	0.87[ASN][1000 genomes]
rs1845355	0.82[EUR][1000 genomes]
rs2029712	0.97[ASN][1000 genomes]
rs2169338	0.87[EUR][1000 genomes]
rs2169339	0.87[EUR][1000 genomes]
rs4032918	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4339995	1.00[ASN][1000 genomes]
rs4489698	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923359	0.91[ASN][1000 genomes]
rs7107402	1.00[ASN][1000 genomes]
rs7107710	1.00[ASN][1000 genomes]
rs7107960	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108703	0.96[ASN][1000 genomes]
rs7109872	0.88[ASN][1000 genomes]
rs7111512	0.91[ASN][1000 genomes]
rs7115101	0.99[ASN][1000 genomes]
rs7123118	0.96[ASN][1000 genomes]
rs7123359	0.96[ASN][1000 genomes]
rs7127048	0.89[EUR][1000 genomes]
rs7129064	0.88[EUR][1000 genomes]
rs72886266	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7925575	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26447200-26463200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26457600-26458200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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