Variant report

Variant	rs7108703
Chromosome Location	chr11:26437164-26437165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10047414	0.96[ASN][1000 genomes]
rs10047464	0.96[ASN][1000 genomes]
rs10742138	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10742139	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10767528	0.86[ASN][1000 genomes]
rs10767529	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767530	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767531	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10767532	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767535	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10834982	0.87[ASN][1000 genomes]
rs11029555	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029556	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029557	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11500182	0.96[ASN][1000 genomes]
rs11820893	0.88[ASN][1000 genomes]
rs12273739	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12275424	0.85[ASN][1000 genomes]
rs12277506	0.85[ASN][1000 genomes]
rs12288668	0.96[ASN][1000 genomes]
rs12288844	0.85[ASN][1000 genomes]
rs12575612	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16915655	0.90[EUR][1000 genomes]
rs2029712	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2126183	0.90[EUR][1000 genomes]
rs4032918	0.95[ASN][1000 genomes]
rs4339995	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4489698	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4923359	0.87[ASN][1000 genomes]
rs56072744	0.90[EUR][1000 genomes]
rs57857863	0.96[ASN][1000 genomes]
rs7107402	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7107710	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7107960	0.96[ASN][1000 genomes]
rs7109872	0.84[ASN][1000 genomes]
rs7111512	0.89[ASN][1000 genomes]
rs7115101	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925575	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26436800-26437600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links