Variant report

Variant	rs12275424
Chromosome Location	chr11:26480232-26480233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10047414	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10047464	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10742138	0.86[ASN][1000 genomes]
rs10742139	0.86[ASN][1000 genomes]
rs10742140	0.80[ASN][1000 genomes]
rs10742141	0.80[ASN][1000 genomes]
rs10767529	0.89[ASN][1000 genomes]
rs10767530	0.89[ASN][1000 genomes]
rs10767531	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10767532	0.89[ASN][1000 genomes]
rs10767535	0.89[ASN][1000 genomes]
rs10767536	0.80[ASN][1000 genomes]
rs10834982	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029555	0.89[ASN][1000 genomes]
rs11029556	0.89[ASN][1000 genomes]
rs11029557	0.89[ASN][1000 genomes]
rs11500182	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11820893	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12273739	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12277506	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288668	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12288844	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389456	0.82[EUR][1000 genomes]
rs1493739	0.80[ASN][1000 genomes]
rs1845355	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2029712	0.90[ASN][1000 genomes]
rs4032918	0.89[ASN][1000 genomes]
rs4339995	0.89[ASN][1000 genomes]
rs4489698	0.89[ASN][1000 genomes]
rs4922758	0.82[ASN][1000 genomes]
rs4923359	0.97[ASN][1000 genomes]
rs57857863	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7107402	0.89[ASN][1000 genomes]
rs7107710	0.89[ASN][1000 genomes]
rs7107960	0.89[ASN][1000 genomes]
rs7108703	0.85[ASN][1000 genomes]
rs7109872	0.86[ASN][1000 genomes]
rs7111512	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7115101	0.89[ASN][1000 genomes]
rs7123118	0.85[ASN][1000 genomes]
rs7123359	0.85[ASN][1000 genomes]
rs7127048	0.80[EUR][1000 genomes]
rs72886266	0.81[EUR][1000 genomes]
rs72886272	0.81[AMR][1000 genomes]
rs7925575	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26472000-26503600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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