Variant report
Variant | rs11820893 |
---|---|
Chromosome Location | chr11:26482178-26482179 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-FIBIN-4 | chr11:26481341-26482905 | ucscGeneNc_uc001mqu_1 |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10047414 | 0.92[ASN][1000 genomes] |
rs10047464 | 0.92[ASN][1000 genomes] |
rs10742138 | 0.89[ASN][1000 genomes] |
rs10742139 | 0.89[ASN][1000 genomes] |
rs10767528 | 0.81[ASN][1000 genomes] |
rs10767529 | 0.92[ASN][1000 genomes] |
rs10767530 | 0.92[ASN][1000 genomes] |
rs10767531 | 0.92[ASN][1000 genomes] |
rs10767532 | 0.92[ASN][1000 genomes] |
rs10767535 | 0.92[ASN][1000 genomes] |
rs10834982 | 0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11029555 | 0.91[ASN][1000 genomes] |
rs11029556 | 0.92[ASN][1000 genomes] |
rs11029557 | 0.92[ASN][1000 genomes] |
rs11500182 | 0.92[ASN][1000 genomes] |
rs12273739 | 0.91[ASN][1000 genomes] |
rs12275424 | 0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12277506 | 0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12288668 | 0.92[ASN][1000 genomes] |
rs12288844 | 0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2029712 | 0.93[ASN][1000 genomes] |
rs4032918 | 0.84[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4339995 | 0.92[ASN][1000 genomes] |
rs4489698 | 0.92[ASN][1000 genomes] |
rs4923359 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs57857863 | 0.92[ASN][1000 genomes] |
rs7107402 | 0.92[ASN][1000 genomes] |
rs7107710 | 0.92[ASN][1000 genomes] |
rs7107960 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7108703 | 0.88[ASN][1000 genomes] |
rs7109872 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7111512 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7115101 | 0.91[ASN][1000 genomes] |
rs7123118 | 0.88[ASN][1000 genomes] |
rs7123359 | 0.88[ASN][1000 genomes] |
rs7925575 | 0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1051211 | chr11:26473131-26604553 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:26472000-26503600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |