Variant report

Variant	rs10742139
Chromosome Location	chr11:26449905-26449906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10047414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10047464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10742137	0.84[CEU][hapmap]
rs10742138	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767526	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767527	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767528	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10767529	0.95[CEU][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767530	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767531	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10767532	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767535	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10834974	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10834982	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11029555	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029556	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029557	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11500182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11820893	0.89[ASN][1000 genomes]
rs12273739	0.96[ASN][1000 genomes]
rs12275424	0.86[ASN][1000 genomes]
rs12277506	0.86[ASN][1000 genomes]
rs12283791	0.80[CHB][hapmap]
rs12288668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12288844	0.86[ASN][1000 genomes]
rs12575612	0.84[ASN][1000 genomes]
rs13377552	0.86[CHB][hapmap]
rs1381174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1461380	0.80[CHB][hapmap]
rs1461384	0.81[CHB][hapmap]
rs1461385	0.80[CHB][hapmap]
rs1563958	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16915655	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2006942	0.80[CHB][hapmap]
rs2029712	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2126183	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2350206	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4032918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4339995	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4489698	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4923359	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56072744	0.82[EUR][1000 genomes]
rs57857863	0.97[ASN][1000 genomes]
rs7102859	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap]
rs7107402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107710	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107960	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108703	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7109872	0.85[ASN][1000 genomes]
rs7111512	0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs7113405	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7115101	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7123118	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7123359	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7480892	0.80[CHB][hapmap]
rs7925120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7925575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7931439	0.80[CHB][hapmap]
rs7936431	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7943164	0.85[CHB][hapmap]
rs961685	0.81[CHB][hapmap]
rs9943473	0.80[CHB][hapmap]
rs9943594	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26447200-26463200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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