Variant report

Variant	rs12288668
Chromosome Location	chr11:26450138-26450139
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10047414	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10047464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10742139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10767526	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767527	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767528	0.88[ASN][1000 genomes]
rs10767529	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767530	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767531	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767532	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767535	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834974	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10834982	0.91[ASN][1000 genomes]
rs11029552	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11029555	0.99[ASN][1000 genomes]
rs11029556	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029557	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11500182	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820893	0.92[ASN][1000 genomes]
rs12273739	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12275424	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12277506	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12287530	0.84[CHB][hapmap]
rs12288844	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12575612	0.87[ASN][1000 genomes]
rs13377552	0.85[CHB][hapmap]
rs1381174	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1389456	0.82[CEU][hapmap]
rs1563958	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16915656	0.94[CEU][hapmap]
rs17309034	1.00[CEU][hapmap]
rs1845355	0.83[EUR][1000 genomes]
rs2029712	0.97[ASN][1000 genomes]
rs2131697	0.83[CEU][hapmap]
rs2131698	0.83[CEU][hapmap]
rs2169338	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2169339	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2350206	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4032918	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4339995	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4489698	1.00[ASN][1000 genomes]
rs4923359	0.91[ASN][1000 genomes]
rs57857863	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102859	1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7107402	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7107710	1.00[ASN][1000 genomes]
rs7107960	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7108703	0.96[ASN][1000 genomes]
rs7109872	0.88[ASN][1000 genomes]
rs7111512	0.84[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7113405	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7115101	0.99[ASN][1000 genomes]
rs7123118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7123359	0.96[ASN][1000 genomes]
rs7127048	0.91[EUR][1000 genomes]
rs7129064	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs72886266	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72886272	0.81[EUR][1000 genomes]
rs7925120	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7925575	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936431	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7942432	0.83[CEU][hapmap]
rs7943164	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26447200-26463200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links