Variant report

Variant	rs11029552
Chromosome Location	chr11:26446073-26446074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10047414	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10047464	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1037899	0.83[YRI][hapmap]
rs10742137	0.84[CEU][hapmap]
rs10742138	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10742139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10767526	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767527	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10767528	0.87[ASN][1000 genomes]
rs10767529	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767530	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767531	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[ASN][1000 genomes]
rs10767532	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10767535	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10834974	0.94[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap]
rs10834982	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029555	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029556	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11029557	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11500182	1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[ASN][1000 genomes]
rs11820893	0.89[ASN][1000 genomes]
rs12270746	0.81[CHD][hapmap]
rs12273739	0.97[ASN][1000 genomes]
rs12275424	0.86[ASN][1000 genomes]
rs12277506	0.86[ASN][1000 genomes]
rs12283791	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs12288668	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12288844	0.86[ASN][1000 genomes]
rs12575612	0.90[ASN][1000 genomes]
rs13377552	0.85[CHB][hapmap]
rs1381174	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1381181	0.83[YRI][hapmap]
rs1461365	0.81[CHD][hapmap]
rs1461366	0.81[CHD][hapmap]
rs1461373	0.81[CHD][hapmap]
rs1461380	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs1461382	0.82[CHD][hapmap]
rs1461384	0.80[CHB][hapmap]
rs1461385	0.80[CHB][hapmap];0.84[CHD][hapmap]
rs1563958	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16915655	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1993745	0.83[YRI][hapmap]
rs2006942	0.80[CHB][hapmap]
rs2029712	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2045703	0.83[YRI][hapmap]
rs2085880	0.81[CHD][hapmap]
rs2126183	0.91[CEU][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes]
rs2350206	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4032918	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4339995	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4489698	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4923354	0.83[YRI][hapmap]
rs4923359	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56072744	0.84[EUR][1000 genomes]
rs57857863	0.97[ASN][1000 genomes]
rs7102859	0.91[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs7107402	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107710	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7107960	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7108703	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7109872	0.85[ASN][1000 genomes]
rs7111512	0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7113405	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.85[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap]
rs7115101	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7123118	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7123359	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7124839	0.81[CHD][hapmap]
rs719106	0.81[CHD][hapmap]
rs7480892	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs7925120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7925575	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7931439	0.80[CHB][hapmap];0.82[CHD][hapmap]
rs7936431	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7943164	0.84[CHB][hapmap]
rs961685	0.80[CHB][hapmap]
rs9943473	0.80[CHB][hapmap];0.87[CHD][hapmap]
rs9943594	0.80[CHB][hapmap];0.82[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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