Variant report

Variant	rs4923354
Chromosome Location	chr11:26393508-26393509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1037899	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs1037900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs10767519	0.96[CEU][hapmap];0.93[CHB][hapmap];0.86[JPT][hapmap]
rs10767520	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029543	0.85[ASN][1000 genomes]
rs11029552	0.83[YRI][hapmap]
rs11824236	0.84[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs12098873	0.90[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs12270746	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs12274334	0.83[ASN][1000 genomes]
rs12274387	0.84[ASN][1000 genomes]
rs12275964	0.86[ASN][1000 genomes]
rs12283791	0.81[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs12287530	0.85[ASN][1000 genomes]
rs12287626	0.83[ASN][1000 genomes]
rs12294597	0.85[ASN][1000 genomes]
rs12294604	0.86[ASN][1000 genomes]
rs13377552	0.81[CHB][hapmap]
rs1381174	0.83[YRI][hapmap]
rs1381177	0.90[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs1381181	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1381183	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1461364	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1461365	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs1461366	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs1461368	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[TSI][hapmap]
rs1461373	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs1461374	0.92[ASN][1000 genomes]
rs1461376	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1461377	0.86[ASN][1000 genomes]
rs1461380	0.81[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs1461382	0.84[CHD][hapmap];0.82[JPT][hapmap]
rs1461384	0.81[CHB][hapmap]
rs1461385	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs16915597	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs1993745	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs2006942	0.85[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2045703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2085878	0.91[ASN][1000 genomes]
rs2085879	0.92[ASN][1000 genomes]
rs2085880	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs2126184	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126185	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2199376	0.92[ASN][1000 genomes]
rs61877724	0.92[ASN][1000 genomes]
rs7104759	0.86[CHB][hapmap]
rs7113405	0.83[YRI][hapmap]
rs7123118	0.83[YRI][hapmap]
rs7123997	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.96[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs7124839	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs7128615	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs716701	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719106	0.90[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap]
rs7480892	0.81[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs7925675	0.81[CHB][hapmap];0.90[ASN][1000 genomes]
rs7928015	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7931439	0.81[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]
rs7940514	0.88[JPT][hapmap]
rs7942291	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs7943164	0.81[CHB][hapmap]
rs7945645	0.92[ASN][1000 genomes]
rs7946083	0.90[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs961685	0.81[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs9943473	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs9943594	0.81[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26392600-26393800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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