Variant report

Variant	rs12287530
Chromosome Location	chr11:26409416-26409417
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10497404	0.87[CEU][hapmap]
rs10767519	0.82[JPT][hapmap]
rs10767520	0.86[ASN][1000 genomes]
rs10767529	0.82[CHB][hapmap]
rs11029538	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11029543	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11824236	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12098873	0.92[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12270746	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[YRI][hapmap]
rs12274334	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12274387	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12275964	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12283791	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs12287626	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12288668	0.84[CHB][hapmap]
rs12294597	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294604	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13377552	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1381177	1.00[CEU][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1381181	0.83[ASN][1000 genomes]
rs1381183	0.83[ASN][1000 genomes]
rs1461364	1.00[CEU][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap]
rs1461365	1.00[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs1461366	1.00[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs1461371	0.87[CEU][hapmap]
rs1461373	1.00[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs1461374	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1461376	0.91[ASN][1000 genomes]
rs1461377	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461380	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs1461382	0.88[CEU][hapmap];0.85[JPT][hapmap];0.92[YRI][hapmap]
rs1461384	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap]
rs1461385	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap]
rs16915597	1.00[CEU][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap]
rs16915622	0.87[CEU][hapmap]
rs2006942	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2085878	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2085879	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2085880	1.00[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2126184	0.85[ASN][1000 genomes]
rs2126185	0.91[ASN][1000 genomes]
rs2199376	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4444034	0.86[CEU][hapmap]
rs4923354	0.85[ASN][1000 genomes]
rs61877724	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67498125	0.81[EUR][1000 genomes]
rs7104759	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[JPT][hapmap]
rs7124839	1.00[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs7128615	0.85[ASN][1000 genomes]
rs716700	0.86[CEU][hapmap]
rs716701	0.85[ASN][1000 genomes]
rs719106	1.00[CEU][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs7480892	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7925120	0.84[CHB][hapmap]
rs7925675	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7928015	1.00[CEU][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap]
rs7931439	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]
rs7940514	1.00[CEU][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap]
rs7942291	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs7943164	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7945645	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7946083	1.00[CEU][hapmap];0.92[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs922246	0.87[CEU][hapmap]
rs961685	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9943473	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap]
rs9943594	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3424642	chr11:26408826-26411074	Enhancers	n/a	n/a	inside rSNPs	diseases
3	esv3449715	chr11:26409205-26409688	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26409400-26410800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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