Variant report

Variant	rs11029538
Chromosome Location	chr11:26388391-26388392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11029543	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11824236	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12098873	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12274334	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12274387	0.84[AMR][1000 genomes]
rs12275964	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12287530	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12287626	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12294597	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12294604	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1381177	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1461374	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1461377	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2006942	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2085878	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2085879	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2085880	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2199376	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61877724	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7480892	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7925675	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7945645	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7946083	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs961685	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26387200-26392600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26387400-26389200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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