Variant report

Variant	rs1993745
Chromosome Location	chr11:26420191-26420192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1037899	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs1037900	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap]
rs10767519	0.96[CEU][hapmap];0.87[CHB][hapmap]
rs10767520	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029543	0.90[ASN][1000 genomes]
rs11029552	0.83[YRI][hapmap]
rs11824236	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs12098873	0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs12270746	0.82[JPT][hapmap]
rs12274334	0.89[ASN][1000 genomes]
rs12274387	0.90[ASN][1000 genomes]
rs12275964	0.91[ASN][1000 genomes]
rs12283791	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs12287530	0.90[ASN][1000 genomes]
rs12287626	0.89[ASN][1000 genomes]
rs12294597	0.90[ASN][1000 genomes]
rs12294604	0.91[ASN][1000 genomes]
rs13377552	0.81[CHB][hapmap]
rs1381174	0.81[YRI][hapmap]
rs1381177	0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs1381181	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1381183	1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1461364	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1461365	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs1461366	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs1461368	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs1461373	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs1461374	0.84[ASN][1000 genomes]
rs1461376	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461377	0.91[ASN][1000 genomes]
rs1461380	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1461382	0.85[CHB][hapmap]
rs1461384	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1461385	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs16915597	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs2006942	0.90[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs2045703	1.00[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs2085878	0.83[ASN][1000 genomes]
rs2085879	0.84[ASN][1000 genomes]
rs2085880	0.80[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2126184	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2126185	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2199376	0.84[ASN][1000 genomes]
rs4923354	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61877724	0.84[ASN][1000 genomes]
rs7113405	0.83[YRI][hapmap]
rs7123118	0.83[YRI][hapmap]
rs7123997	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap]
rs7124839	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs7128615	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs716701	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs719106	0.80[CHB][hapmap];0.82[JPT][hapmap]
rs7480892	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs7925120	0.83[CHB][hapmap]
rs7925675	0.85[ASN][1000 genomes]
rs7928015	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs7931439	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs7940514	0.89[CHB][hapmap];0.81[JPT][hapmap]
rs7942291	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs7943164	0.90[CHB][hapmap]
rs7945645	0.84[ASN][1000 genomes]
rs7946083	0.81[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs961685	0.90[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs9943473	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs9943594	0.90[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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