Variant report

Variant	rs2126183
Chromosome Location	chr11:26442126-26442127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10497404	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10742137	0.85[CEU][hapmap]
rs10742138	0.81[EUR][1000 genomes]
rs10742139	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs10767526	0.91[CEU][hapmap]
rs10767527	0.95[CEU][hapmap]
rs10767529	0.91[CEU][hapmap]
rs10767535	0.87[CEU][hapmap]
rs10834974	0.95[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs11029552	0.91[CEU][hapmap];0.92[TSI][hapmap]
rs11029555	0.90[EUR][1000 genomes]
rs1381174	0.91[CEU][hapmap]
rs1389456	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs1461371	0.90[CHB][hapmap]
rs1563958	0.95[CEU][hapmap]
rs16915622	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs16915655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915656	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17309034	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1845355	0.91[ASN][1000 genomes]
rs2029712	0.81[EUR][1000 genomes]
rs2131697	0.80[JPT][hapmap]
rs2169338	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2169339	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.99[ASN][1000 genomes]
rs2350206	0.95[CEU][hapmap]
rs4444034	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs56072744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58872250	0.89[ASN][1000 genomes]
rs61877726	0.89[ASN][1000 genomes]
rs61877727	0.89[ASN][1000 genomes]
rs67498125	0.87[ASN][1000 genomes]
rs7102859	0.82[CEU][hapmap]
rs7107402	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7107710	0.80[EUR][1000 genomes]
rs7108703	0.90[EUR][1000 genomes]
rs7113405	0.95[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap]
rs7115101	0.84[EUR][1000 genomes]
rs7123118	0.95[CEU][hapmap];0.86[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7123359	0.88[EUR][1000 genomes]
rs7127048	0.93[ASN][1000 genomes]
rs7129064	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs716700	0.90[CHB][hapmap];0.89[ASN][1000 genomes]
rs72886266	0.95[ASN][1000 genomes]
rs72886272	0.93[ASN][1000 genomes]
rs7925120	0.89[CEU][hapmap]
rs7936431	0.95[CEU][hapmap]
rs7942432	1.00[JPT][hapmap]
rs922246	0.90[CHB][hapmap];0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26441400-26442200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:26441800-26442400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:26442000-26442600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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