Variant report
| Variant | rs72886266 |
|---|---|
| Chromosome Location | chr11:26460770-26460771 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10047414 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10047464 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs10767531 | 0.88[EUR][1000 genomes] |
| rs11500182 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12273739 | 0.86[EUR][1000 genomes] |
| rs12275424 | 0.81[EUR][1000 genomes] |
| rs12277506 | 0.81[EUR][1000 genomes] |
| rs12288668 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12288844 | 0.81[EUR][1000 genomes] |
| rs16915655 | 0.95[ASN][1000 genomes] |
| rs1845355 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2126183 | 0.95[ASN][1000 genomes] |
| rs2169338 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2169339 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4032918 | 0.82[EUR][1000 genomes] |
| rs4444034 | 0.87[ASN][1000 genomes] |
| rs56072744 | 0.95[ASN][1000 genomes] |
| rs57857863 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs58872250 | 0.87[ASN][1000 genomes] |
| rs61877726 | 0.87[ASN][1000 genomes] |
| rs61877727 | 0.87[ASN][1000 genomes] |
| rs67498125 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7107960 | 0.82[EUR][1000 genomes] |
| rs7127048 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7129064 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs716700 | 0.87[ASN][1000 genomes] |
| rs72886272 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7925575 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422406 | chr11:26329870-26473641 | Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26447200-26463200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
