Variant report

Variant	rs2169338
Chromosome Location	chr11:26442291-26442292
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10047414	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10047464	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs10497404	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs10767531	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs11500182	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs12273739	0.87[EUR][1000 genomes]
rs12288668	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1389456	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs1461371	0.90[CHB][hapmap]
rs16915622	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs16915655	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16915656	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17309034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1845355	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2126183	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2131697	0.83[CEU][hapmap];0.80[JPT][hapmap]
rs2131698	0.83[CEU][hapmap]
rs2169339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4032918	0.81[CEU][hapmap]
rs4444034	0.90[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs56072744	1.00[ASN][1000 genomes]
rs57857863	0.87[EUR][1000 genomes]
rs58872250	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61877726	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs61877727	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs67498125	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7111512	0.85[CEU][hapmap]
rs7127048	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7129064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs716700	0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs72886266	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72886272	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7925575	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs7942432	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs922246	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26441800-26442400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:26442000-26442600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:26442200-26442600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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