Variant report

Variant	rs7111512
Chromosome Location	chr11:26482280-26482281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FIBIN-4	chr11:26481341-26482905	ucscGeneNc_uc001mqu_1

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10047414	0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10047464	0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10742138	0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10742139	0.89[CHB][hapmap];0.94[JPT][hapmap];0.88[ASN][1000 genomes]
rs10742141	0.84[JPT][hapmap]
rs10767526	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10767527	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs10767529	0.91[ASN][1000 genomes]
rs10767530	0.91[ASN][1000 genomes]
rs10767531	0.90[CEU][hapmap];0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10767532	0.91[ASN][1000 genomes]
rs10767535	0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs10834974	0.89[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap]
rs10834982	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11029552	0.89[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap]
rs11029555	0.90[ASN][1000 genomes]
rs11029556	0.91[ASN][1000 genomes]
rs11029557	0.91[ASN][1000 genomes]
rs11500182	0.89[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs11820893	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12270746	0.83[TSI][hapmap]
rs12273739	0.90[ASN][1000 genomes]
rs12275424	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12277506	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12283791	0.83[TSI][hapmap]
rs12288668	0.84[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs12288844	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1381174	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs1389456	0.86[TSI][hapmap]
rs1461365	0.83[TSI][hapmap]
rs1461366	0.83[TSI][hapmap]
rs1461373	0.83[TSI][hapmap]
rs1461380	0.83[TSI][hapmap]
rs1461382	0.83[TSI][hapmap]
rs1461385	0.83[TSI][hapmap]
rs1493739	0.84[JPT][hapmap]
rs1563958	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs17309034	0.85[CEU][hapmap]
rs2029712	0.92[ASN][1000 genomes]
rs2085880	0.83[TSI][hapmap]
rs2169338	0.85[CEU][hapmap]
rs2169339	0.85[CEU][hapmap]
rs2350206	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs4032918	0.95[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4339995	0.91[ASN][1000 genomes]
rs4489698	0.91[ASN][1000 genomes]
rs4923359	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57857863	0.91[ASN][1000 genomes]
rs7102859	0.94[CHB][hapmap];0.80[JPT][hapmap]
rs7107402	0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7107710	0.91[ASN][1000 genomes]
rs7107960	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7108703	0.89[ASN][1000 genomes]
rs7109872	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7113405	0.89[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap]
rs7115101	0.90[ASN][1000 genomes]
rs7123118	0.89[CHB][hapmap];0.87[CHD][hapmap];0.80[GIH][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7123359	0.89[ASN][1000 genomes]
rs7124839	0.83[TSI][hapmap]
rs7129064	0.85[CEU][hapmap]
rs719106	0.83[TSI][hapmap]
rs7480892	0.83[TSI][hapmap]
rs7925120	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7925575	0.89[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs7931439	0.83[TSI][hapmap]
rs7936431	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs7948627	0.84[JPT][hapmap]
rs9943473	0.83[TSI][hapmap]
rs9943594	0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26472000-26503600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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