Variant report

Variant	rs4923359
Chromosome Location	chr11:26471710-26471711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10047414	0.91[ASN][1000 genomes]
rs10047464	0.91[ASN][1000 genomes]
rs10742138	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10742139	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10767529	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10767530	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10767531	0.91[ASN][1000 genomes]
rs10767532	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10767535	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10834982	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11029555	0.90[ASN][1000 genomes]
rs11029556	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11029557	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11029566	0.88[AFR][1000 genomes]
rs11500182	0.91[ASN][1000 genomes]
rs11820893	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12273739	0.90[ASN][1000 genomes]
rs12275424	0.97[ASN][1000 genomes]
rs12277506	0.97[ASN][1000 genomes]
rs12288668	0.91[ASN][1000 genomes]
rs12288844	0.97[ASN][1000 genomes]
rs2029712	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4032918	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4339995	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4489698	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4922758	0.93[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs57857863	0.91[ASN][1000 genomes]
rs7107402	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107710	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7107960	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7108703	0.87[ASN][1000 genomes]
rs7109872	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7111512	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7115101	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7123118	0.87[ASN][1000 genomes]
rs7123359	0.87[ASN][1000 genomes]
rs7925575	0.91[ASN][1000 genomes]
rs7947275	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26462600-26473400	Weak transcription	Adipose Nuclei	Adipose
2	chr11:26471600-26472000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links