Variant report
| Variant | rs12575612 |
|---|---|
| Chromosome Location | chr11:26421489-26421490 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10047414 | 0.87[ASN][1000 genomes] |
| rs10047464 | 0.87[ASN][1000 genomes] |
| rs10742138 | 0.84[ASN][1000 genomes] |
| rs10742139 | 0.84[ASN][1000 genomes] |
| rs10767529 | 0.87[ASN][1000 genomes] |
| rs10767530 | 0.87[ASN][1000 genomes] |
| rs10767531 | 0.87[ASN][1000 genomes] |
| rs10767532 | 0.87[ASN][1000 genomes] |
| rs10767535 | 0.87[ASN][1000 genomes] |
| rs11029555 | 0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11029556 | 0.87[ASN][1000 genomes] |
| rs11029557 | 0.87[ASN][1000 genomes] |
| rs11500182 | 0.87[ASN][1000 genomes] |
| rs12273739 | 0.88[ASN][1000 genomes] |
| rs12288668 | 0.87[ASN][1000 genomes] |
| rs2029712 | 0.85[ASN][1000 genomes] |
| rs4032918 | 0.86[ASN][1000 genomes] |
| rs4339995 | 0.87[ASN][1000 genomes] |
| rs4489698 | 0.87[ASN][1000 genomes] |
| rs57857863 | 0.87[ASN][1000 genomes] |
| rs7107402 | 0.87[ASN][1000 genomes] |
| rs7107710 | 0.87[ASN][1000 genomes] |
| rs7107960 | 0.87[ASN][1000 genomes] |
| rs7108703 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7115101 | 0.88[ASN][1000 genomes] |
| rs7123118 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7123359 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7925575 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422406 | chr11:26329870-26473641 | Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26420800-26421600 | Enhancers | NHDF-Ad | bronchial |
| 2 | chr11:26421200-26421600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
