Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10742140	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742141	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10834982	0.80[ASN][1000 genomes]
rs11029571	0.89[EUR][1000 genomes]
rs11029574	0.83[EUR][1000 genomes]
rs11029576	0.82[EUR][1000 genomes]
rs11029577	0.82[EUR][1000 genomes]
rs12275424	0.80[ASN][1000 genomes]
rs12277506	0.80[ASN][1000 genomes]
rs12288844	0.80[ASN][1000 genomes]
rs12803551	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1318678	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1355131	0.82[EUR][1000 genomes]
rs1355132	0.82[EUR][1000 genomes]
rs1493739	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509170	0.87[ASN][1000 genomes]
rs2860040	0.82[EUR][1000 genomes]
rs7119659	0.89[EUR][1000 genomes]
rs72889134	0.82[EUR][1000 genomes]
rs7948627	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs903155	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26472000-26503600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26488200-26494800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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