Variant report

Variant	rs10769158
Chromosome Location	chr11:45666866-45666867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1026078	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10769159	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11603055	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12420703	0.83[ASW][hapmap];0.92[CEU][hapmap];0.90[JPT][hapmap];0.80[LWK][hapmap];0.84[MKK][hapmap];0.82[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2012019	0.90[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes]
rs4148895	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4148899	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.96[MKK][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4148901	0.83[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs737244	0.90[JPT][hapmap]
rs895734	0.83[ASW][hapmap];0.80[LWK][hapmap];0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10769158	CHST1	cis	parietal	SCAN
rs10769158	OR4C45	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45659200-45669400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:45663600-45671200	Weak transcription	Spleen	Spleen
3	chr11:45665600-45667600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:45665600-45671000	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:45665600-45674400	Weak transcription	HMEC	breast
6	chr11:45665600-45680000	Weak transcription	Gastric	stomach
7	chr11:45665800-45667800	Weak transcription	NHEK	skin
8	chr11:45665800-45669400	Weak transcription	Left Ventricle	heart
9	chr11:45665800-45670600	Weak transcription	Fetal Brain Female	brain
10	chr11:45665800-45670600	Weak transcription	Right Ventricle	heart
11	chr11:45665800-45671200	Weak transcription	Brain Anterior Caudate	brain
12	chr11:45665800-45671800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:45666200-45671000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:45666800-45667400	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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