Variant report

Variant	rs11603055
Chromosome Location	chr11:45676364-45676365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:45671225..45673031-chr11:45675062..45677985,2	K562	blood:
2	chr11:45658659..45661256-chr11:45675243..45676992,2	K562	blood:
3	chr11:45676348..45677919-chr11:45792905..45794177,5	K562	blood:

Variant related genes	Relation type
ENSG00000205106	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1026078	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10769158	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10769159	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10838504	0.88[AFR][1000 genomes]
rs12420703	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2012019	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4148894	0.95[AFR][1000 genomes]
rs4148895	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4148899	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4148901	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs895733	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs895734	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897311	chr11:45663568-45691118	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897312	chr11:45663568-45699134	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv897313	chr11:45670395-45699134	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv554197	chr11:45673014-45679212	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv554198	chr11:45674266-45684117	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45665600-45680000	Weak transcription	Gastric	stomach
2	chr11:45669800-45676400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:45669800-45676400	Weak transcription	HUVEC	blood vessel
4	chr11:45669800-45676600	Weak transcription	Left Ventricle	heart
5	chr11:45670000-45680200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:45670600-45676600	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:45672600-45676400	Weak transcription	Right Ventricle	heart
8	chr11:45673200-45677000	Weak transcription	Ovary	ovary
9	chr11:45673400-45677000	Weak transcription	Lung	lung
10	chr11:45673600-45677200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:45673800-45676600	Weak transcription	Fetal Brain Female	brain
12	chr11:45673800-45677400	Enhancers	Fetal Muscle Leg	muscle
13	chr11:45674000-45677200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:45674200-45677000	Enhancers	Fetal Stomach	stomach
15	chr11:45674200-45679800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:45674400-45676400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:45674400-45676400	Weak transcription	Spleen	Spleen
18	chr11:45674400-45677000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:45674600-45676600	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr11:45674600-45677000	Weak transcription	HMEC	breast
21	chr11:45674600-45679800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr11:45674800-45676400	Weak transcription	Brain Angular Gyrus	brain
23	chr11:45674800-45676400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:45674800-45676800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr11:45674800-45676800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:45675200-45676400	Weak transcription	Brain Substantia Nigra	brain
27	chr11:45675200-45676600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:45675400-45676600	Enhancers	Brain Cingulate Gyrus	brain
29	chr11:45675400-45676600	Weak transcription	Dnd41	blood
30	chr11:45675600-45677800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr11:45675600-45679800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr11:45675800-45676600	Enhancers	Brain Anterior Caudate	brain
33	chr11:45675800-45676600	Weak transcription	Fetal Kidney	kidney
34	chr11:45675800-45677000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr11:45675800-45677000	Enhancers	Placenta	Placenta
36	chr11:45675800-45677200	Enhancers	Skeletal Muscle Female	skeletal muscle
37	chr11:45675800-45677400	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr11:45675800-45677400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:45675800-45677400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr11:45676000-45676800	Enhancers	Psoas Muscle	Psoas
41	chr11:45676000-45677000	Enhancers	Osteobl	bone
42	chr11:45676000-45677600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:45676000-45677800	Enhancers	Brain Germinal Matrix	brain
44	chr11:45676200-45676800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:45676200-45677000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr11:45676200-45677400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr11:45676200-45677800	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links