Variant report

Variant	rs10770044
Chromosome Location	chr11:9627663-9627664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr11:9627392-9627680	K562	blood:	n/a	chr11:9627522-9627535
2	RCOR1	chr11:9627330-9627668	K562	blood:	n/a	n/a
3	GATA1	chr11:9627063-9627773	K562	blood:	n/a	n/a
4	TEAD4	chr11:9627228-9627743	K562	blood:	n/a	n/a
5	POLR2A	chr11:9627614-9628202	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:9479980..9482925-chr11:9627285..9628824,2	MCF-7	breast:
2	chr11:9602719..9605077-chr11:9625885..9628580,3	K562	blood:
3	chr11:9593380..9601954-chr11:9626466..9639393,32	K562	blood:

Variant related genes	Relation type
ENSG00000243964	TF binding region
ENSG00000238387	Chromatin interaction
ENSG00000166483	Chromatin interaction
ENSG00000166478	Chromatin interaction
ENSG00000268403	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11042439	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11042440	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11042441	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs11042444	0.81[EUR][1000 genomes]
rs11042466	0.82[CEU][hapmap]
rs12807017	0.86[CEU][hapmap]
rs36084509	0.80[EUR][1000 genomes]
rs7120616	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7123263	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv971986	chr11:9625730-9628863	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9597200-9635000	Weak transcription	Pancreas	Pancrea
2	chr11:9610600-9635000	Weak transcription	Aorta	Aorta
3	chr11:9623200-9628200	Weak transcription	Fetal Intestine Large	intestine
4	chr11:9623400-9628400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:9623400-9628600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:9623400-9631600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:9623400-9634600	Weak transcription	Thymus	Thymus
8	chr11:9623600-9628200	Weak transcription	Fetal Intestine Small	intestine
9	chr11:9623600-9628400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:9623600-9628600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr11:9623600-9628800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:9623600-9630400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:9623600-9631400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:9623600-9631600	Weak transcription	Placenta	Placenta
15	chr11:9623600-9633600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:9623600-9634200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:9623600-9634600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:9623600-9634800	Weak transcription	Esophagus	oesophagus
19	chr11:9623600-9635000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:9624000-9628800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr11:9624200-9628400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:9624200-9628400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr11:9624200-9628800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:9624200-9634800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr11:9624400-9628800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:9624400-9634200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:9624400-9634200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:9624400-9635000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:9625600-9628200	Weak transcription	HepG2	liver
30	chr11:9625800-9628400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr11:9625800-9630000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr11:9626400-9629200	Enhancers	K562	blood
33	chr11:9626600-9630400	Weak transcription	GM12878-XiMat	blood
34	chr11:9626600-9632400	Weak transcription	Dnd41	blood
35	chr11:9627600-9627800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links