Variant report

Variant	rs7123263
Chromosome Location	chr11:9641843-9641844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10770044	0.84[EUR][1000 genomes]
rs11042436	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11042438	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11042439	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11042440	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11042441	0.90[EUR][1000 genomes]
rs11042442	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11042443	0.88[EUR][1000 genomes]
rs11042444	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11042457	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11607321	0.82[EUR][1000 genomes]
rs12362879	0.82[EUR][1000 genomes]
rs35084800	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36084509	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7120616	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9635400-9646400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:9636400-9647400	Weak transcription	Right Atrium	heart
3	chr11:9636600-9642200	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:9637000-9646800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:9637200-9644600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr11:9638000-9642200	Enhancers	Primary B cells from cord blood	blood
7	chr11:9638200-9642400	Enhancers	Placenta	Placenta
8	chr11:9638200-9646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:9638600-9646600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:9639800-9648600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:9640000-9642000	Enhancers	GM12878-XiMat	blood
12	chr11:9640000-9646800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:9641600-9647800	Weak transcription	HSMMtube	muscle
14	chr11:9641800-9645600	Weak transcription	Spleen	Spleen
15	chr11:9641800-9645800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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