Variant report

Variant	rs11042457
Chromosome Location	chr11:9663295-9663296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9654445..9657389-chr11:9662464..9664639,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10770044	0.85[CEU][hapmap]
rs10770051	0.89[EUR][1000 genomes]
rs10840283	1.00[ASN][1000 genomes]
rs10840284	1.00[ASN][1000 genomes]
rs10840286	1.00[ASN][1000 genomes]
rs10840287	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11042411	1.00[YRI][hapmap]
rs11042439	0.95[CEU][hapmap]
rs11042440	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs11042441	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs11042462	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042464	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042466	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042467	1.00[ASN][1000 genomes]
rs11042486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042500	1.00[CHB][hapmap]
rs11600183	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11601008	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603527	1.00[ASN][1000 genomes]
rs11607321	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607776	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11607900	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362879	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364089	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12786236	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789209	1.00[ASN][1000 genomes]
rs12789429	1.00[ASN][1000 genomes]
rs12794270	1.00[ASN][1000 genomes]
rs12797744	1.00[ASN][1000 genomes]
rs12801958	1.00[ASN][1000 genomes]
rs12803440	1.00[ASN][1000 genomes]
rs12805683	1.00[ASN][1000 genomes]
rs12807017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17268632	1.00[CHB][hapmap]
rs34063054	1.00[ASN][1000 genomes]
rs35806232	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089180	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910060	1.00[ASN][1000 genomes]
rs4910486	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910487	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4910488	1.00[ASN][1000 genomes]
rs4910492	1.00[ASN][1000 genomes]
rs4910493	1.00[ASN][1000 genomes]
rs4910497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4910505	1.00[CHB][hapmap]
rs56043731	1.00[ASN][1000 genomes]
rs67867011	1.00[ASN][1000 genomes]
rs7120616	0.90[CEU][hapmap];1.00[YRI][hapmap]
rs7123263	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72852112	1.00[ASN][1000 genomes]
rs7928738	0.81[CEU][hapmap]
rs7943610	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv972945	chr11:9660423-9684250	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9660600-9670400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:9661200-9665800	Weak transcription	Right Atrium	heart
3	chr11:9661200-9666200	Weak transcription	Lung	lung
4	chr11:9661600-9667600	Weak transcription	Spleen	Spleen
5	chr11:9661800-9664200	Weak transcription	Primary B cells from cord blood	blood
6	chr11:9661800-9665200	Weak transcription	Fetal Intestine Large	intestine
7	chr11:9661800-9665200	Weak transcription	Fetal Intestine Small	intestine
8	chr11:9661800-9667200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:9662400-9664200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:9662600-9664200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr11:9662600-9664200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr11:9662600-9664400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr11:9662800-9664400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr11:9662800-9664400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:9663000-9664200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:9663200-9663600	Weak transcription	Primary monocytes fromperipheralblood	blood

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