Variant report

Variant	rs11607776
Chromosome Location	chr11:9667143-9667144
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10770051	0.94[EUR][1000 genomes]
rs10840283	0.82[EUR][1000 genomes]
rs10840284	0.83[EUR][1000 genomes]
rs10840286	0.81[EUR][1000 genomes]
rs11042457	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11042462	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11042464	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11042466	0.85[EUR][1000 genomes]
rs11601008	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11607321	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11607900	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12362879	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12364089	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12807017	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35806232	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36089180	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4910486	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4910487	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv972945	chr11:9660423-9684250	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9660600-9670400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:9661600-9667600	Weak transcription	Spleen	Spleen
3	chr11:9661800-9667200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:9664400-9667800	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:9665200-9668400	Enhancers	Fetal Intestine Small	intestine
6	chr11:9666200-9667800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:9666400-9667200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:9666400-9667600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr11:9666400-9667600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:9666400-9667600	Weak transcription	Fetal Intestine Large	intestine
11	chr11:9666400-9667600	Weak transcription	Pancreas	Pancrea
12	chr11:9666400-9669400	Weak transcription	Lung	lung
13	chr11:9666400-9670000	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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