Variant report

Variant	rs4910486
Chromosome Location	chr11:9673741-9673742
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9634944..9638366-chr11:9672187..9674812,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10770044	0.82[CEU][hapmap]
rs10770051	0.93[EUR][1000 genomes]
rs10840283	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840284	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840286	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840287	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11042411	1.00[YRI][hapmap]
rs11042439	0.95[CEU][hapmap]
rs11042440	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs11042441	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs11042457	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042462	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042464	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042466	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042467	1.00[ASN][1000 genomes]
rs11042486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042500	1.00[CHB][hapmap]
rs11042511	1.00[CHB][hapmap]
rs11600183	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11601008	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603527	1.00[ASN][1000 genomes]
rs11607321	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607776	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11607900	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362879	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364089	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12786236	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789209	1.00[ASN][1000 genomes]
rs12789429	1.00[ASN][1000 genomes]
rs12794270	1.00[ASN][1000 genomes]
rs12797744	1.00[ASN][1000 genomes]
rs12801958	1.00[ASN][1000 genomes]
rs12803440	1.00[ASN][1000 genomes]
rs12805683	1.00[ASN][1000 genomes]
rs12807017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808226	1.00[CHB][hapmap]
rs17268632	1.00[CHB][hapmap]
rs34063054	1.00[ASN][1000 genomes]
rs35806232	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089180	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910060	1.00[ASN][1000 genomes]
rs4910487	0.91[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910488	1.00[ASN][1000 genomes]
rs4910492	1.00[ASN][1000 genomes]
rs4910493	1.00[ASN][1000 genomes]
rs4910497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4910505	1.00[CHB][hapmap]
rs56043731	1.00[ASN][1000 genomes]
rs67867011	1.00[ASN][1000 genomes]
rs7120616	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs72852112	1.00[ASN][1000 genomes]
rs7943610	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv972945	chr11:9660423-9684250	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv553468	chr11:9667828-9827871	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9672600-9674400	Enhancers	Fetal Intestine Small	intestine
2	chr11:9673000-9674400	Enhancers	Fetal Intestine Large	intestine
3	chr11:9673000-9675600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:9673200-9673800	Enhancers	K562	blood
5	chr11:9673200-9674000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:9673200-9674200	Enhancers	Adipose Nuclei	Adipose
7	chr11:9673200-9674400	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:9673200-9674400	Enhancers	Primary hematopoietic stem cells	blood
9	chr11:9673200-9674400	Enhancers	Small Intestine	intestine
10	chr11:9673200-9674400	Enhancers	Spleen	Spleen
11	chr11:9673200-9674600	Enhancers	HUVEC	blood vessel
12	chr11:9673200-9674800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:9673200-9674800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr11:9673200-9675000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:9673200-9678400	Enhancers	Placenta	Placenta
16	chr11:9673400-9673800	Enhancers	Colonic Mucosa	Colon
17	chr11:9673400-9674000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr11:9673400-9674000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:9673400-9674000	Enhancers	HSMMtube	muscle
20	chr11:9673400-9674200	Enhancers	Stomach Mucosa	stomach
21	chr11:9673600-9673800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:9673600-9673800	Enhancers	Duodenum Mucosa	Duodenum
23	chr11:9673600-9674200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr11:9673600-9674200	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links