Variant report

Variant	rs12364089
Chromosome Location	chr11:9648894-9648895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9633888..9638474-chr11:9645827..9648910,5	K562	blood:
2	chr11:9639664..9642964-chr11:9645191..9649077,5	K562	blood:
3	chr11:9633888..9637224-chr11:9645529..9649937,4	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10770044	0.82[CEU][hapmap]
rs10770051	0.95[EUR][1000 genomes]
rs10840283	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840284	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840286	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840287	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11042411	1.00[YRI][hapmap]
rs11042439	0.95[CEU][hapmap]
rs11042440	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs11042441	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs11042457	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042462	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042464	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042466	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11042467	1.00[ASN][1000 genomes]
rs11042486	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11042500	1.00[CHB][hapmap]
rs11600183	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs11601008	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603527	1.00[ASN][1000 genomes]
rs11607321	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607776	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11607900	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362879	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421878	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12786236	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12789209	1.00[ASN][1000 genomes]
rs12789429	1.00[ASN][1000 genomes]
rs12794270	1.00[ASN][1000 genomes]
rs12797744	1.00[ASN][1000 genomes]
rs12801958	1.00[ASN][1000 genomes]
rs12803440	1.00[ASN][1000 genomes]
rs12805683	1.00[ASN][1000 genomes]
rs12807017	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34063054	1.00[ASN][1000 genomes]
rs35806232	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36089180	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910060	1.00[ASN][1000 genomes]
rs4910486	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910487	0.91[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910488	1.00[ASN][1000 genomes]
rs4910492	1.00[ASN][1000 genomes]
rs4910493	1.00[ASN][1000 genomes]
rs4910497	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4910505	1.00[CHB][hapmap]
rs56043731	1.00[ASN][1000 genomes]
rs67867011	1.00[ASN][1000 genomes]
rs7120616	0.91[CEU][hapmap];1.00[YRI][hapmap]
rs72852112	1.00[ASN][1000 genomes]
rs7943610	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9646400-9649200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr11:9646800-9649400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:9646800-9649400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:9646800-9650600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:9646800-9650600	Enhancers	GM12878-XiMat	blood
6	chr11:9647400-9649000	Enhancers	K562	blood
7	chr11:9647400-9649400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:9647600-9649600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:9647600-9650400	Weak transcription	Spleen	Spleen
10	chr11:9647600-9652400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:9647800-9649200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:9647800-9652200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr11:9647800-9654800	Weak transcription	Primary B cells from cord blood	blood
14	chr11:9648000-9649000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:9648000-9649000	Flanking Active TSS	HUVEC	blood vessel
16	chr11:9648000-9649000	Enhancers	NHDF-Ad	bronchial
17	chr11:9648000-9649200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr11:9648200-9649000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:9648200-9649000	Enhancers	Fetal Muscle Leg	muscle
20	chr11:9648200-9649200	Enhancers	Lung	lung
21	chr11:9648200-9649400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
22	chr11:9648400-9649000	Enhancers	Osteobl	bone
23	chr11:9648400-9650400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:9648400-9650600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:9648600-9649000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:9648600-9649800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr11:9648600-9650600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr11:9648800-9649000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
29	chr11:9648800-9649000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:9648800-9649000	Enhancers	Adipose Nuclei	Adipose
31	chr11:9648800-9649000	Enhancers	Fetal Stomach	stomach
32	chr11:9648800-9650000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:9648800-9650400	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr11:9648800-9650800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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