Variant report

Variant	rs36089180
Chromosome Location	chr11:9659577-9659578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9657185..9659878-chr11:9660285..9662259,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10770051	0.95[EUR][1000 genomes]
rs10840283	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840284	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840286	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10840287	1.00[ASN][1000 genomes]
rs11042457	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042462	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042464	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042466	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11042467	1.00[ASN][1000 genomes]
rs11042486	1.00[ASN][1000 genomes]
rs11600183	1.00[ASN][1000 genomes]
rs11601008	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603527	1.00[ASN][1000 genomes]
rs11607321	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607776	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11607900	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362879	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364089	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12421878	1.00[ASN][1000 genomes]
rs12786236	1.00[ASN][1000 genomes]
rs12789209	1.00[ASN][1000 genomes]
rs12789429	1.00[ASN][1000 genomes]
rs12794270	1.00[ASN][1000 genomes]
rs12797744	1.00[ASN][1000 genomes]
rs12801958	1.00[ASN][1000 genomes]
rs12803440	1.00[ASN][1000 genomes]
rs12805683	1.00[ASN][1000 genomes]
rs12807017	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34063054	1.00[ASN][1000 genomes]
rs35806232	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910060	1.00[ASN][1000 genomes]
rs4910486	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910487	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910488	1.00[ASN][1000 genomes]
rs4910492	1.00[ASN][1000 genomes]
rs4910493	1.00[ASN][1000 genomes]
rs4910497	1.00[ASN][1000 genomes]
rs56043731	1.00[ASN][1000 genomes]
rs67867011	1.00[ASN][1000 genomes]
rs72852112	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896986	chr11:9636854-9679145	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1053369	chr11:9647837-9876054	Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9656000-9659600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:9656000-9660200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:9656000-9660600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:9656200-9660200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:9656200-9660400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:9656400-9660200	Weak transcription	Primary B cells from cord blood	blood
7	chr11:9656600-9660600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:9658400-9661600	Enhancers	Spleen	Spleen
9	chr11:9658800-9660600	Weak transcription	Fetal Intestine Small	intestine
10	chr11:9659000-9660200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:9659200-9661600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr11:9659400-9661600	Enhancers	Adipose Nuclei	Adipose
13	chr11:9659400-9663200	Enhancers	Primary monocytes fromperipheralblood	blood

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