Variant report

Variant	rs35084800
Chromosome Location	chr11:9619155-9619156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:9616144..9619684-chr11:9621223..9625658,6	K562	blood:
2	chr11:9616955..9619245-chr11:9624041..9625658,2	K562	blood:
3	chr11:9601912..9604402-chr11:9618697..9620230,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166483	Chromatin interaction
ENSG00000243869	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11042433	0.81[AMR][1000 genomes]
rs11042436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042439	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11042440	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11042441	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11042442	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042443	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11042444	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12416887	0.84[AFR][1000 genomes]
rs12422111	0.81[AMR][1000 genomes]
rs35042828	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs36084509	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7120616	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7123263	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9597000-9622000	Weak transcription	Spleen	Spleen
2	chr11:9597200-9635000	Weak transcription	Pancreas	Pancrea
3	chr11:9599600-9622800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:9599800-9622400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:9601400-9622600	Weak transcription	Right Atrium	heart
6	chr11:9601600-9622200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr11:9607000-9622400	Weak transcription	Small Intestine	intestine
8	chr11:9607800-9622600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:9610200-9622600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:9610600-9621800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr11:9610600-9622200	Weak transcription	Primary T cells from cord blood	blood
12	chr11:9610600-9622200	Weak transcription	Lung	lung
13	chr11:9610600-9622600	Weak transcription	Colonic Mucosa	Colon
14	chr11:9610600-9622600	Weak transcription	Esophagus	oesophagus
15	chr11:9610600-9622600	Weak transcription	Thymus	Thymus
16	chr11:9610600-9622800	Weak transcription	Right Ventricle	heart
17	chr11:9610600-9627200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:9610600-9635000	Weak transcription	Aorta	Aorta
19	chr11:9610800-9622200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:9610800-9622200	Weak transcription	Adipose Nuclei	Adipose
21	chr11:9610800-9622600	Weak transcription	Brain Germinal Matrix	brain
22	chr11:9610800-9622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr11:9611000-9622000	Weak transcription	NHEK	skin
24	chr11:9611000-9622200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:9611000-9622600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:9611200-9621800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:9611200-9622600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:9611200-9622600	Weak transcription	K562	blood
29	chr11:9611200-9622800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr11:9611400-9622600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:9611400-9623400	Weak transcription	Fetal Lung	lung
32	chr11:9611600-9621600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:9611600-9622200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:9611600-9622400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr11:9611600-9622600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:9611600-9622600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr11:9611800-9622200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:9611800-9622600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:9612000-9621800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:9612000-9623200	Weak transcription	Liver	Liver
41	chr11:9612200-9621800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr11:9612200-9621800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:9612200-9621800	Weak transcription	Fetal Muscle Leg	muscle
44	chr11:9612200-9621800	Weak transcription	Left Ventricle	heart
45	chr11:9612200-9622600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:9612200-9622800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:9612200-9622800	Weak transcription	Fetal Intestine Small	intestine
48	chr11:9612400-9621800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr11:9612400-9621800	Weak transcription	Dnd41	blood
50	chr11:9612400-9622000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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